Factsheet for PGSC0003DMT400017734

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040141
PGSC0003DMT400040142
PGSC0003DMT400040143
PGSC0003DMT400040144
PGSC0003DMT400040206
PGSC0003DMT400040207
PGSC0003DMT400077934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26880.1	PGSC0003DMT400040141	AT3G46090.1	17259181
AT5G26880.1	PGSC0003DMT400040142	AT3G46090.1	17259181
AT5G26880.1	PGSC0003DMT400040143	AT3G46090.1	17259181
AT5G26880.1	PGSC0003DMT400040144	AT3G46090.1	17259181
AT5G26880.1	PGSC0003DMT400040206	AT3G46090.1	17259181
AT5G26880.1	PGSC0003DMT400040207	AT3G46090.1	17259181
AT5G26880.1	PGSC0003DMT400077934	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G050430.1	Barley	extracellular	58.41	56.41
Solyc01g086900.2.1	Tomato	plastid	98.23	43.02
OQU80943	Sorghum	endoplasmic reticulum, extracellular, vacuole	73.45	43.01
VIT_13s0064g01270.t01	Wine grape	plastid	81.42	36.8
KRH43478	Soybean	plastid	76.99	33.46
TraesCS7A01G245500.1	Wheat	mitochondrion	72.57	32.54
TraesCS7D01G244100.1	Wheat	mitochondrion	72.57	32.54
TraesCS7B01G146000.1	Wheat	mitochondrion	71.68	32.14
AT5G26880.1	Thale cress	plastid	72.57	31.18
GSMUA_Achr7P02040_001	Banana	mitochondrion	74.34	29.68
Zm00001d031439_P001	Maize	mitochondrion	73.45	28.82
Os08t0506500-00	Rice	mitochondrion	59.29	27.46
CDX82513	Canola	plastid	66.37	27.37
CDX75734	Canola	plastid	65.49	24.26
HORVU7Hr1G050390.9	Barley	plastid	28.32	12.55

Protein Annotations

Gene3D:3.40.1280.10	MapMan:35.2	InterPro:Alpha/beta_knot_MTases	GO:GO:0001510	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0006950
GO:GO:0006995	GO:GO:0007154	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008173
GO:GO:0009605	GO:GO:0009987	GO:GO:0009991	GO:GO:0016740	InterPro:IPR029026	UniProt:M1A9D3
PFAM:PF00588	EnsemblPlantsGene:PGSC0003DMG400006881	PGSC:PGSC0003DMG400006881	EnsemblPlants:PGSC0003DMT400017734	PANTHER:PTHR42971	PANTHER:PTHR42971:SF2
SUPFAM:SSF75217	InterPro:SpoU_MeTrfase	UniParc:UPI000296DF88	InterPro:tRNA_cyt/urid_MeTfrase	InterPro:tRNA_m1G_MTases_N	:

Description

23S rRNA methyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400006881]

Coordinates

chr1:-:66144099..66147427

Molecular Weight (calculated)

12491.8 Da

IEP (calculated)

4.522

GRAVY (calculated)

-0.235

Length

113 amino acids

Sequence
(BLAST)

001: MEQAGEKRLL AFTKRGTATH SDFSYKKGDW LVFGSETKGL PPEALLDCKS ESLGGGTLRI PMVETYVRCL NLSVSVGIAV YEASRQINYE QLQCPPDTCM
101: DTETSFVTED IFA

Best Arabidopsis Sequence Match ( AT5G26880.1 )
(BLAST)

001: MESCCRSVIA SRTFHLRSSG RLFPSLSLTH LKGKLSLSIN SFSSKIQSHA LRGVGIGESD KKNPLPRGAG EGVKEDARSK LLHVVLVSPQ IPGNTGCIAR
101: TCAASAVGLH LVGPLGFQVD DARVKRAGLD YWPFVVVKAH SSWAEFQEYF RLQEGEKRMI AFTKRGTRIH SDFSYRSGDY LLFGSETSGL PPEALSDCNH
201: EPYGGGTLRI PMVETYVRCL NLSVSVGIAL YEASRQLNYE QIECAPQGCV NGEEPLLTED IFA

Arabidopsis Description

AGL26AGL26 [Source:UniProtKB/TrEMBL;Acc:A0A178UI04]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.