Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75734 | Canola | plastid | 93.43 | 83.93 |
| AT5G26880.1 | Thale cress | plastid | 73.36 | 76.43 |
| PGSC0003DMT400017734 | Potato | cytosol, mitochondrion, plastid | 27.37 | 66.37 |
| OQU80943 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 45.62 | 64.77 |
| VIT_13s0064g01270.t01 | Wine grape | plastid | 58.76 | 64.4 |
| KRH43478 | Soybean | plastid | 57.66 | 60.77 |
| Solyc01g086900.2.1 | Tomato | plastid | 52.55 | 55.81 |
| TraesCS7D01G244100.1 | Wheat | mitochondrion | 51.09 | 55.56 |
| TraesCS7A01G245500.1 | Wheat | mitochondrion | 50.73 | 55.16 |
| TraesCS7B01G146000.1 | Wheat | mitochondrion | 50.73 | 55.16 |
| HORVU7Hr1G050430.1 | Barley | extracellular | 23.36 | 54.7 |
| GSMUA_Achr7P02040_001 | Banana | mitochondrion | 54.01 | 52.3 |
| Zm00001d031439_P001 | Maize | mitochondrion | 52.55 | 50.0 |
| Os08t0506500-00 | Rice | mitochondrion | 40.51 | 45.49 |
| HORVU7Hr1G050390.9 | Barley | plastid | 25.91 | 27.84 |
Protein Annotations
| KEGG:00260+2.1.1.20 | Gene3D:3.40.1280.10 | MapMan:35.2 | GO:A0A078D5K0 | InterPro:Alpha/beta_knot_MTases | EnsemblPlants:CDX82513 |
| ProteinID:CDX82513 | ProteinID:CDX82513.1 | GO:GO:0001510 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008168 | GO:GO:0008173 | GO:GO:0009987 | GO:GO:0016740 | EnsemblPlantsGene:GSBRNA2T00137659001 | InterPro:IPR029026 |
| HAMAP:MF_01885 | PFAM:PF00588 | PANTHER:PTHR42971 | PANTHER:PTHR42971:SF2 | MetaCyc:PWY-6004 | SUPFAM:SSF75217 |
| InterPro:SpoU_MeTrfase | UniParc:UPI0004EDDD6C | InterPro:tRNA_cyt/urid_MeTfrase | InterPro:tRNA_m1G_MTases_N | : | : |
Description
BnaA03g33080D
Coordinates
chrLK031828:+:1656536..1658742
Molecular Weight (calculated)
30217.2 Da
IEP (calculated)
8.840
GRAVY (calculated)
-0.292
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSCGRSSLS FFIASRPFHL RHQSSDRLLP SLGLTHLNLK SRLSLSITSF STKILSPPPL SDKDKRSNAL PRGAGEGVKE DARSKMLQVV LVSPQIPGNT
101: GCIARTCAAS AVGLHLVGPL GFQVDDAKVK RAGLDYWPFV VVKAHSSWAE FQEYFRQQEG EKRMIAFTKR GTKIHSEFSY RRGDYLLFGS ETSGLPPEAL
201: SDCKSELYGG GTIRIPMVET YVRCLNLSVS VGVAVYEASR QLNYEQIECA PEGDSVNECK MGLWKNEKPT ELTH
101: GCIARTCAAS AVGLHLVGPL GFQVDDAKVK RAGLDYWPFV VVKAHSSWAE FQEYFRQQEG EKRMIAFTKR GTKIHSEFSY RRGDYLLFGS ETSGLPPEAL
201: SDCKSELYGG GTIRIPMVET YVRCLNLSVS VGVAVYEASR QLNYEQIECA PEGDSVNECK MGLWKNEKPT ELTH
001: MESCCRSVIA SRTFHLRSSG RLFPSLSLTH LKGKLSLSIN SFSSKIQSHA LRGVGIGESD KKNPLPRGAG EGVKEDARSK LLHVVLVSPQ IPGNTGCIAR
101: TCAASAVGLH LVGPLGFQVD DARVKRAGLD YWPFVVVKAH SSWAEFQEYF RLQEGEKRMI AFTKRGTRIH SDFSYRSGDY LLFGSETSGL PPEALSDCNH
201: EPYGGGTLRI PMVETYVRCL NLSVSVGIAL YEASRQLNYE QIECAPQGCV NGEEPLLTED IFA
101: TCAASAVGLH LVGPLGFQVD DARVKRAGLD YWPFVVVKAH SSWAEFQEYF RLQEGEKRMI AFTKRGTRIH SDFSYRSGDY LLFGSETSGL PPEALSDCNH
201: EPYGGGTLRI PMVETYVRCL NLSVSVGIAL YEASRQLNYE QIECAPQGCV NGEEPLLTED IFA
Arabidopsis Description
AGL26AGL26 [Source:UniProtKB/TrEMBL;Acc:A0A178UI04]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.