Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44873 | Canola | nucleus | 91.04 | 91.04 |
| Bra009436.1-P | Field mustard | nucleus | 72.64 | 47.71 |
| CDY54756 | Canola | nucleus | 37.31 | 37.88 |
| CDY12757 | Canola | nucleus | 28.86 | 36.25 |
| CDY50510 | Canola | nucleus | 37.31 | 32.75 |
| CDY49671 | Canola | mitochondrion, nucleus | 37.81 | 32.07 |
| CDX93668 | Canola | nucleus | 38.31 | 31.95 |
| AT1G46408.1 | Thale cress | nucleus | 40.3 | 30.45 |
| CDY28103 | Canola | plastid | 36.32 | 29.55 |
| CDY40477 | Canola | nucleus | 35.82 | 29.15 |
| CDY67845 | Canola | nucleus | 36.82 | 27.82 |
| CDY16511 | Canola | nucleus | 36.82 | 27.51 |
| CDY16529 | Canola | nucleus | 37.31 | 27.17 |
| CDY12872 | Canola | nucleus | 34.83 | 27.13 |
| CDY32839 | Canola | nucleus | 35.82 | 27.07 |
| CDX77232 | Canola | nucleus | 35.82 | 27.07 |
| AT5G04640.1 | Thale cress | nucleus | 41.29 | 25.78 |
| CDX85418 | Canola | nucleus | 33.33 | 25.57 |
| CDX85396 | Canola | nucleus | 35.32 | 24.91 |
| CDY12741 | Canola | nucleus | 33.83 | 24.73 |
| CDX86226 | Canola | nucleus | 36.32 | 24.66 |
| CDY01199 | Canola | nucleus | 34.33 | 23.47 |
| CDY46277 | Canola | nucleus | 25.87 | 23.42 |
| CDX86252 | Canola | nucleus | 34.83 | 23.03 |
| CDY50584 | Canola | nucleus | 21.39 | 16.35 |
| CDY25046 | Canola | nucleus | 20.4 | 15.59 |
| CDY12742 | Canola | cytosol, mitochondrion, nucleus | 1.49 | 5.56 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078C5E6 | EnsemblPlants:CDX70208 | ProteinID:CDX70208 | ProteinID:CDX70208.1 |
| ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00136331001 | InterPro:IPR002100 |
| InterPro:IPR036879 | InterPro:MADS_SRF-like | PFAM:PF00319 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EDFE46 | : |
Description
BnaA10g25570D
Coordinates
chrLK031790:-:3557907..3559028
Molecular Weight (calculated)
22628.7 Da
IEP (calculated)
7.346
GRAVY (calculated)
-0.563
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGLKRKIPT DKKIERKESK SVAFSKRRKG LFSKTAQLCV LSGAQVAILA TPPCSKSNVS FYSFGHSSVD NVVSAFLKDQ YPREDHLGSE FWWEDKRLAE
101: SEDPKELSEA VDSISRMMQN LKGLRSKALA NREDAKKKKK EVVFDQSQTL NFQSAGASRN LYGCYQEFDI DQIFDFVEST EDLSMNSEVD VASMIASLME
201: N
101: SEDPKELSEA VDSISRMMQN LKGLRSKALA NREDAKKKKK EVVFDQSQTL NFQSAGASRN LYGCYQEFDI DQIFDFVEST EDLSMNSEVD VASMIASLME
201: N
001: MGGVKRKISI ELIEKKDSRA VAFSKRSRGL YSKASDLCLL SDAQIAIIAT PVSSKSNVSF YTFGHSSVDN VVAAFLTNQR PREGLGLDYW WEDERLSKSE
101: DLEELRDAMD SMSKMLKDLK DLQNQRDCEE DVKKKGVLHG THQKQTFNPE SCSVNFDGFN KNTEEFDLDE IFDYVSTAEA LSMNLDMDDV SVVTTNQNPV
201: SASETVEDRE LVVHKNMDED NIHVSDMDDK DTMLMISDKN NVLPENLDEF DQELDLDQLL DFETNYESLL KSCEMEDYAS MVTTKQNLCS NPEAVEDGGL
301: MIQKDLPEDN LCFSDYFSDL HC
101: DLEELRDAMD SMSKMLKDLK DLQNQRDCEE DVKKKGVLHG THQKQTFNPE SCSVNFDGFN KNTEEFDLDE IFDYVSTAEA LSMNLDMDDV SVVTTNQNPV
201: SASETVEDRE LVVHKNMDED NIHVSDMDDK DTMLMISDKN NVLPENLDEF DQELDLDQLL DFETNYESLL KSCEMEDYAS MVTTKQNLCS NPEAVEDGGL
301: MIQKDLPEDN LCFSDYFSDL HC
Arabidopsis Description
AGL99AGAMOUS-like 99 [Source:UniProtKB/TrEMBL;Acc:Q9LZ61]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.