Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80329 | Canola | nucleus | 83.39 | 83.39 |
| Bra002611.1-P | Field mustard | nucleus | 63.79 | 64.65 |
| AT5G58890.1 | Thale cress | nucleus | 51.83 | 53.06 |
| CDY11987 | Canola | mitochondrion, nucleus | 29.24 | 32.12 |
| CDY36759 | Canola | mitochondrion, nucleus | 29.24 | 32.12 |
| KRG93896 | Soybean | nucleus | 9.3 | 29.79 |
| VIT_15s0021g02220.t01 | Wine grape | nucleus | 20.6 | 20.74 |
| KRH42540 | Soybean | nucleus | 20.93 | 20.72 |
| VIT_15s0021g02250.t01 | Wine grape | nucleus | 21.26 | 20.32 |
| KRH44465 | Soybean | nucleus | 14.95 | 20.09 |
| KRH42537 | Soybean | nucleus | 16.94 | 18.68 |
| KRH58631 | Soybean | nucleus | 18.94 | 18.21 |
| KRG93950 | Soybean | nucleus | 16.94 | 17.23 |
| KRH18233 | Soybean | nucleus | 16.61 | 16.67 |
| PGSC0003DMT400085676 | Potato | nucleus | 12.62 | 16.67 |
| KRH37770 | Soybean | cytosol | 10.3 | 16.4 |
| Solyc11g020320.1.1 | Tomato | nucleus | 13.62 | 14.91 |
| Solyc11g020660.1.1 | Tomato | nucleus | 14.95 | 14.42 |
| KRG93859 | Soybean | mitochondrion | 15.95 | 13.48 |
| KRH47443 | Soybean | nucleus | 15.61 | 13.31 |
| KRG93897 | Soybean | mitochondrion | 15.61 | 13.31 |
| Solyc11g020620.1.1 | Tomato | nucleus | 14.95 | 13.16 |
| PGSC0003DMT400071001 | Potato | nucleus | 15.28 | 11.86 |
| KRG93920 | Soybean | mitochondrion | 11.3 | 11.33 |
| KRH12811 | Soybean | cytosol | 14.29 | 11.14 |
| PGSC0003DMT400023977 | Potato | nucleus | 8.97 | 7.65 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078IW03 | UniProt:A0A078IW03 | EnsemblPlants:CDY54181 | ProteinID:CDY54181 |
| ProteinID:CDY54181.1 | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00013557001 | InterPro:IPR002100 |
| InterPro:IPR036879 | InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF176 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE5F9C |
| SEG:seg | : | : | : | : | : |
Description
BnaA10g29170DBnaA10g29170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IW03]
Coordinates
chrLK033288:+:41492..42397
Molecular Weight (calculated)
35101.7 Da
IEP (calculated)
8.678
GRAVY (calculated)
-0.876
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MRVQKMAHEK VVDLQRITND KTRMTTYKKR RACLYKKAGE FSTLCGVQTC LIVYGPTKAT DEVISKPEIW PEDETKARDI IRRYRDTASN SCRKEAHVET
101: FVNDKGKAKE TENTNTNNNN KRGMNNKNKY CCWEERLEKC SQEQLRGIFD DVGNKLHEAI MRQNRRAQHQ AMEPQTPQNL MDPYYMSQYF AGYQQQQCLM
201: FPYNNMSFPL FSPHDDQIPM EPILVENFAD SSGVNQGFMM SKGNESTQFM QRQAPYYIEP VVQRSASFNV NPFTGYQVPY NVPRLPANQA EVWDFMAKKP
301: I
101: FVNDKGKAKE TENTNTNNNN KRGMNNKNKY CCWEERLEKC SQEQLRGIFD DVGNKLHEAI MRQNRRAQHQ AMEPQTPQNL MDPYYMSQYF AGYQQQQCLM
201: FPYNNMSFPL FSPHDDQIPM EPILVENFAD SSGVNQGFMM SKGNESTQFM QRQAPYYIEP VVQRSASFNV NPFTGYQVPY NVPRLPANQA EVWDFMAKKP
301: I
001: MVPKVVDLQR IANDKTRITT YKKRKASLYK KAQEFSTLCG VETCLIVYGP TKATDVVISE PEIWPKDETK VRAIIRKYKD TVSTSCRKET NVETFVNDVG
101: KGNEVVTKKR VKRENKYSSW EEKLDKCSRE QLHGIFCAVD SKLNEAVTRQ ERSMFRVNHQ AMDTPFPQNL MDQQFMPQYF HEQPQFQGFP NNFNNMGFSL
201: ISPHDGQIQM DPNLMEKWTD LALTQSLMMS KGNDGTQFMQ RQEQPYYNRE QVVSRSAGFN VNPFMGYQVP FNIPNWRLSG NQVENWELSG KKTI
101: KGNEVVTKKR VKRENKYSSW EEKLDKCSRE QLHGIFCAVD SKLNEAVTRQ ERSMFRVNHQ AMDTPFPQNL MDQQFMPQYF HEQPQFQGFP NNFNNMGFSL
201: ISPHDGQIQM DPNLMEKWTD LALTQSLMMS KGNDGTQFMQ RQEQPYYNRE QVVSRSAGFN VNPFMGYQVP FNIPNWRLSG NQVENWELSG KKTI
Arabidopsis Description
AGL82Agamous-like MADS-box protein AGL82 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIM0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.