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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 2
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_19s0014g00310.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G58890.1 VIT_19s0014g00310.t01 AT1G77980.1 15805477
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_15s0021g02220.t01 Wine grape nucleus 80.0 84.28
KRG93896 Soybean nucleus 10.48 35.11
KRH42537 Soybean nucleus 24.44 28.21
PGSC0003DMT400071682 Potato nucleus 26.03 27.42
KRH58631 Soybean nucleus 26.98 27.16
KRH44465 Soybean nucleus 19.05 26.79
Solyc01g103550.1.1 Tomato nucleus 23.81 24.12
PGSC0003DMT400064120 Potato nucleus 24.44 24.06
KRH42540 Soybean nucleus 22.86 23.68
CDX80329 Canola nucleus 20.32 21.26
CDY54181 Canola nucleus 20.32 21.26
AT5G55690.1 Thale cress nucleus 17.78 20.22
AT5G58890.1 Thale cress nucleus 18.73 20.07
KRG93950 Soybean nucleus 18.41 19.59
KRH18233 Soybean nucleus 18.1 19.0
CDY36759 Canola mitochondrion, nucleus 16.51 18.98
CDY11987 Canola mitochondrion, nucleus 16.51 18.98
Bra028965.1-P Field mustard mitochondrion, nucleus 16.51 18.98
KRH47443 Soybean nucleus 20.95 18.7
KRH37770 Soybean cytosol 10.48 17.46
KRG93859 Soybean mitochondrion 18.41 16.29
KRG93897 Soybean mitochondrion 16.83 15.01
KRG93920 Soybean mitochondrion 13.97 14.67
KRH12811 Soybean cytosol 17.78 14.51
Bra002611.1-P Field mustard nucleus 12.38 13.13
Protein Annotations
MapMan:15.5.14Gene3D:3.40.1810.10EMBL:AM465548ProteinID:CAN81313ProteinID:CAN81313.1ProteinID:CCB43859
ProteinID:CCB43859.1UniProt:F6GV76EMBL:FN594952GO:GO:0000982GO:GO:0000987GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0045944GO:GO:0046983
InterPro:IPR002100InterPro:IPR036879InterPro:MADS_SRF-likePFAM:PF00319PRINTS:PR00404PFscan:PS50066
PANTHER:PTHR11945PANTHER:PTHR11945:SF176SMART:SM00432SUPFAM:SSF55455TIGR:TC52968InterPro:TF_MADSbox
InterPro:TF_MADSbox_sfUniParc:UPI00015C9B7DArrayExpress:VIT_15s0021g02250EnsemblPlantsGene:VIT_15s0021g02250EnsemblPlants:VIT_15s0021g02250.t01unigene:Vvi.24983
SEG:seg:::::
Description
No Description!
Coordinates
chr15:+:13193648..13194680
Molecular Weight (calculated)
35837.1 Da
IEP (calculated)
7.927
GRAVY (calculated)
-0.637
Length
315 amino acids
Sequence
(BLAST)
001: MGRSRLPLEL IPKEKSRKIT FQKRTMGLKK KTYEISTLCG VDACVIIYNW TSDDRPMEPI FWPSNPEEVK SIINRYKEHS KEERGLKTLD LSGFFEERTK
101: KIQKEISKLG HQGADQTKYP TWDDRLNDLS TDQLRELVNA LGNKLEVIKS RVELLKMSQA LLEGPASVNP SYPNNAMPST QSLHVPYMGA IDSMPLVPNP
201: MTPMMNPRMT KVMMAMMTND NTNSSQFSGP SNCTNNTQYT PPLQHPFYYD PTSGLLENIV YSNPGPSSCY YPPAMLPPIL PYIPNQMITN VPQIARDYDM
301: NELDVNDNKQ GIRYG
Best Arabidopsis Sequence Match ( AT5G55690.1 )
(BLAST)
001: MGRKMVKMTR ITNEKTRITT YKKRKACLYK KASEFSTLCG VDTCVIVYGP SRAGDEMVME PELWPKDGSK VREILTKYRD TASSSCTKTY TVQECLEKNN
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM
Arabidopsis Description
At5g55690 [Source:UniProtKB/TrEMBL;Acc:Q9FM69]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.