Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
VIT_19s0014g00310.t01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G58890.1 | VIT_19s0014g00310.t01 | AT1G77980.1 | 15805477 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_15s0021g02220.t01 | Wine grape | nucleus | 80.0 | 84.28 |
KRG93896 | Soybean | nucleus | 10.48 | 35.11 |
KRH42537 | Soybean | nucleus | 24.44 | 28.21 |
PGSC0003DMT400071682 | Potato | nucleus | 26.03 | 27.42 |
KRH58631 | Soybean | nucleus | 26.98 | 27.16 |
KRH44465 | Soybean | nucleus | 19.05 | 26.79 |
Solyc01g103550.1.1 | Tomato | nucleus | 23.81 | 24.12 |
PGSC0003DMT400064120 | Potato | nucleus | 24.44 | 24.06 |
KRH42540 | Soybean | nucleus | 22.86 | 23.68 |
CDX80329 | Canola | nucleus | 20.32 | 21.26 |
CDY54181 | Canola | nucleus | 20.32 | 21.26 |
AT5G55690.1 | Thale cress | nucleus | 17.78 | 20.22 |
AT5G58890.1 | Thale cress | nucleus | 18.73 | 20.07 |
KRG93950 | Soybean | nucleus | 18.41 | 19.59 |
KRH18233 | Soybean | nucleus | 18.1 | 19.0 |
CDY36759 | Canola | mitochondrion, nucleus | 16.51 | 18.98 |
CDY11987 | Canola | mitochondrion, nucleus | 16.51 | 18.98 |
Bra028965.1-P | Field mustard | mitochondrion, nucleus | 16.51 | 18.98 |
KRH47443 | Soybean | nucleus | 20.95 | 18.7 |
KRH37770 | Soybean | cytosol | 10.48 | 17.46 |
KRG93859 | Soybean | mitochondrion | 18.41 | 16.29 |
KRG93897 | Soybean | mitochondrion | 16.83 | 15.01 |
KRG93920 | Soybean | mitochondrion | 13.97 | 14.67 |
KRH12811 | Soybean | cytosol | 17.78 | 14.51 |
Bra002611.1-P | Field mustard | nucleus | 12.38 | 13.13 |
Protein Annotations
MapMan:15.5.14 | Gene3D:3.40.1810.10 | EMBL:AM465548 | ProteinID:CAN81313 | ProteinID:CAN81313.1 | ProteinID:CCB43859 |
ProteinID:CCB43859.1 | UniProt:F6GV76 | EMBL:FN594952 | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 |
PANTHER:PTHR11945 | PANTHER:PTHR11945:SF176 | SMART:SM00432 | SUPFAM:SSF55455 | TIGR:TC52968 | InterPro:TF_MADSbox |
InterPro:TF_MADSbox_sf | UniParc:UPI00015C9B7D | ArrayExpress:VIT_15s0021g02250 | EnsemblPlantsGene:VIT_15s0021g02250 | EnsemblPlants:VIT_15s0021g02250.t01 | unigene:Vvi.24983 |
SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr15:+:13193648..13194680
Molecular Weight (calculated)
35837.1 Da
IEP (calculated)
7.927
GRAVY (calculated)
-0.637
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSRLPLEL IPKEKSRKIT FQKRTMGLKK KTYEISTLCG VDACVIIYNW TSDDRPMEPI FWPSNPEEVK SIINRYKEHS KEERGLKTLD LSGFFEERTK
101: KIQKEISKLG HQGADQTKYP TWDDRLNDLS TDQLRELVNA LGNKLEVIKS RVELLKMSQA LLEGPASVNP SYPNNAMPST QSLHVPYMGA IDSMPLVPNP
201: MTPMMNPRMT KVMMAMMTND NTNSSQFSGP SNCTNNTQYT PPLQHPFYYD PTSGLLENIV YSNPGPSSCY YPPAMLPPIL PYIPNQMITN VPQIARDYDM
301: NELDVNDNKQ GIRYG
101: KIQKEISKLG HQGADQTKYP TWDDRLNDLS TDQLRELVNA LGNKLEVIKS RVELLKMSQA LLEGPASVNP SYPNNAMPST QSLHVPYMGA IDSMPLVPNP
201: MTPMMNPRMT KVMMAMMTND NTNSSQFSGP SNCTNNTQYT PPLQHPFYYD PTSGLLENIV YSNPGPSSCY YPPAMLPPIL PYIPNQMITN VPQIARDYDM
301: NELDVNDNKQ GIRYG
001: MGRKMVKMTR ITNEKTRITT YKKRKACLYK KASEFSTLCG VDTCVIVYGP SRAGDEMVME PELWPKDGSK VREILTKYRD TASSSCTKTY TVQECLEKNN
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM
Arabidopsis Description
At5g55690 [Source:UniProtKB/TrEMBL;Acc:Q9FM69]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.