Factsheet for PGSC0003DMT400071682

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93896	Soybean	nucleus	8.36	26.6
KRH44465	Soybean	nucleus	19.73	26.34
VIT_15s0021g02250.t01	Wine grape	nucleus	27.42	26.03
VIT_15s0021g02220.t01	Wine grape	nucleus	25.42	25.42
KRH42537	Soybean	nucleus	23.08	25.27
PGSC0003DMT400064120	Potato	nucleus	25.75	24.06
PGSC0003DMT400085676	Potato	nucleus	17.39	22.81
KRH42540	Soybean	nucleus	23.08	22.7
KRH58631	Soybean	nucleus	22.74	21.73
KRH47443	Soybean	nucleus	21.74	18.41
KRG93950	Soybean	nucleus	17.39	17.57
PGSC0003DMT400071001	Potato	nucleus	22.07	17.01
KRH37770	Soybean	cytosol	10.7	16.93
KRG93859	Soybean	mitochondrion	20.07	16.85
KRG93897	Soybean	mitochondrion	18.73	15.86
KRH18233	Soybean	nucleus	15.72	15.67
KRG93920	Soybean	mitochondrion	13.04	13.0
KRH12811	Soybean	cytosol	16.72	12.95
PGSC0003DMT400023977	Potato	nucleus	14.38	12.18

Protein Annotations

EntrezGene:102589735	MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000982	GO:GO:0000987
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M1CP54	InterPro:MADS_SRF-like	PFAM:PF00319
EnsemblPlantsGene:PGSC0003DMG400027886	PGSC:PGSC0003DMG400027886	EnsemblPlants:PGSC0003DMT400071682	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF176	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000295E89F
RefSeq:XP_006342405.1	SEG:seg	:	:	:	:

Description

Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027886]

Coordinates

chr7:-:39107047..39108380

Molecular Weight (calculated)

35380.9 Da

IEP (calculated)

7.997

GRAVY (calculated)

-0.759

Length

299 amino acids

Sequence
(BLAST)

001: MGRKKIGMEL IKNERSRNLT YQKRKKGLEK KAEELSILCQ VKLCVIIYGD KVQEEPTTLW PEKETVQSLI ESYRGRSDDD RRLRTHDLSF YFREIAKKVE
101: MESSKLRKKN YEAKYPTWDQ FYDNLSTHQL KQIASSLEAK IELIKQRMEY LKGTQRISLE DMQGMSYVGK QTIATPQPCI MQSLVRKNSL QLEIIEEEQQ
201: PLDVPPTMNF PAEMMMMINT HHVNNNNIIV ENQLGGMKGM MMIDQNNMLF DDHPQPMCYF VPVVTPTNYF HHHHQYPMLP TQRGQYYYEM DHLPNNDMK

Best Arabidopsis Sequence Match ( AT5G55690.1 )
(BLAST)

001: MGRKMVKMTR ITNEKTRITT YKKRKACLYK KASEFSTLCG VDTCVIVYGP SRAGDEMVME PELWPKDGSK VREILTKYRD TASSSCTKTY TVQECLEKNN
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM

Arabidopsis Description

At5g55690 [Source:UniProtKB/TrEMBL;Acc:Q9FM69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.