CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16660
KRH18859

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58890.1	KRH16660	AT1G77980.1	15805477
AT5G58890.1	KRH18859	AT1G77980.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93896	Soybean	nucleus	17.42	65.96
KRG93897	Soybean	mitochondrion	64.04	64.59
KRH44465	Soybean	nucleus	28.93	45.98
KRH18233	Soybean	nucleus	37.64	44.67
KRH47443	Soybean	nucleus	38.2	38.53
KRG93920	Soybean	mitochondrion	31.46	37.33
KRG93950	Soybean	nucleus	30.62	36.82
KRH37770	Soybean	cytosol	13.2	24.87
KRH12811	Soybean	cytosol	23.88	22.02
KRH42537	Soybean	nucleus	16.85	21.98
VIT_15s0021g02220.t01	Wine grape	nucleus	17.13	20.4
PGSC0003DMT400071682	Potato	nucleus	16.85	20.07
AT5G55690.1	Thale cress	nucleus	15.45	19.86
KRH42540	Soybean	nucleus	15.73	18.42
VIT_15s0021g02250.t01	Wine grape	nucleus	16.29	18.41
KRH58631	Soybean	nucleus	15.73	17.89
CDY36759	Canola	mitochondrion, nucleus	13.76	17.88
CDY11987	Canola	mitochondrion, nucleus	13.76	17.88
Bra028965.1-P	Field mustard	mitochondrion, nucleus	13.76	17.88
PGSC0003DMT400064120	Potato	nucleus	15.45	17.19
AT5G58890.1	Thale cress	nucleus	14.04	17.01
Solyc01g103550.1.1	Tomato	nucleus	14.33	16.4
CDY54181	Canola	nucleus	13.48	15.95
CDX80329	Canola	nucleus	12.36	14.62
Bra002611.1-P	Field mustard	nucleus	6.18	7.41

Protein Annotations

EntrezGene:106797420	MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:ACUP02011633	EnsemblPlantsGene:GLYMA_19G045900	GO:GO:0000982
GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:K7MWJ8	EnsemblPlants:KRG93859
ProteinID:KRG93859	ProteinID:KRG93859.1	InterPro:MADS_SRF-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066
PANTHER:PTHR11945	PANTHER:PTHR11945:SF176	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI000295DA7B	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:6897027..6898660

Molecular Weight (calculated)

40395.6 Da

IEP (calculated)

6.399

GRAVY (calculated)

-0.652

Length

356 amino acids

Sequence
(BLAST)

001: MGRARITLKL ISNERSRRLT FKSRREILIK KTSEFSTLCG VEACLIVYDN GNGDVAPVTW PKEPVLVHPI LQKYESQKNE RPPKTFGIED FLENRKNMVE
101: ADISKVHKQI SNIKYPTWDP SFTNMEEKQL KAFITQVNAK IMACDHVLQN KHQSKANNIM QNMAWGSASS SHIPSQITPT PNNNGRVYVT NPINQFDGAS
201: NHGMNMQQVD ACYGYIPTMA QESTNSTSSY PRQFNCLQNI PQSQPIFEDL KPLDYKNEMV DFSYQVDVPL DSTNQLGVYA DWTNNQFGDF EDWINRPIDG
301: SNQPVNGDLV GLDNKPNESI LQNIPVQYQN KQQGGALHVL PPPLNGFQTD CYNVNF

Best Arabidopsis Sequence Match ( AT5G55690.1 )
(BLAST)

001: MGRKMVKMTR ITNEKTRITT YKKRKACLYK KASEFSTLCG VDTCVIVYGP SRAGDEMVME PELWPKDGSK VREILTKYRD TASSSCTKTY TVQECLEKNN
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM

Arabidopsis Description

At5g55690 [Source:UniProtKB/TrEMBL;Acc:Q9FM69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.