Factsheet for Bra028965.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018296.1-P
Bra033467.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55690.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G55690.1	Bra033467.1-P	AT3G51920.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11987	Canola	mitochondrion, nucleus	99.27	99.27
CDY36759	Canola	mitochondrion, nucleus	99.27	99.27
AT5G55690.1	Thale cress	nucleus	68.61	67.87
KRG93896	Soybean	nucleus	10.58	30.85
KRH42537	Soybean	nucleus	22.26	22.34
KRH58631	Soybean	nucleus	22.99	20.13
KRH44465	Soybean	nucleus	16.42	20.09
KRH42540	Soybean	nucleus	22.26	20.07
PGSC0003DMT400085676	Potato	nucleus	14.96	17.98
VIT_15s0021g02220.t01	Wine grape	nucleus	18.61	17.06
VIT_15s0021g02250.t01	Wine grape	nucleus	18.98	16.51
KRG93950	Soybean	nucleus	15.69	14.53
KRH18233	Soybean	nucleus	15.69	14.33
Solyc11g020320.1.1	Tomato	nucleus	14.23	14.18
KRG93859	Soybean	mitochondrion	17.88	13.76
PGSC0003DMT400071001	Potato	nucleus	19.34	13.66
KRH47443	Soybean	nucleus	16.79	13.03
KRG93897	Soybean	mitochondrion	16.79	13.03
Solyc11g020620.1.1	Tomato	nucleus	16.06	12.87
KRH37770	Soybean	cytosol	8.76	12.7
Bra002611.1-P	Field mustard	nucleus	13.14	12.12
Solyc11g020660.1.1	Tomato	nucleus	13.5	11.86
KRH12811	Soybean	cytosol	15.33	10.88
KRG93920	Soybean	mitochondrion	11.68	10.67
PGSC0003DMT400023977	Potato	nucleus	12.41	9.63

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra028965	EnsemblPlants:Bra028965.1	EnsemblPlants:Bra028965.1-P	GO:GO:0000982
GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M4EJJ9	InterPro:MADS_SRF-like
PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF176	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000253FE0F	SEG:seg	:

Description

AT5G55690 (E=5e-105) | MADS-box protein (AGL47)

Coordinates

chrA03:+:5621626..5622450

Molecular Weight (calculated)

31460.6 Da

IEP (calculated)

8.239

GRAVY (calculated)

-0.639

Length

274 amino acids

Sequence
(BLAST)

001: MGRKMVKMAR ITNEKTRITT YRKRKECLFK KANEFSTLCG VNTCLIVYGP TRAGDERIDH PELWPKDERK VREIITKYRD TASSSCIKTY SVQECLEKSK
101: IKLEKEKYCP WDNKLEKCSL NELYATFVTV CNKIQEAANR KQTFPDASWS THRDQLGLIG YNQPCLEQHQ LFPMSSMEQN GFAFLPFLNQ MTSTSNTGEV
201: ASFSNVTEPE MTQAMFYGSC SDGQYAPMVQ KTDYMEPVQW GLGNSMFSNV KPFADYPMRF GQVNDLESSG KTPM

Best Arabidopsis Sequence Match ( AT5G55690.1 )
(BLAST)

001: MGRKMVKMTR ITNEKTRITT YKKRKACLYK KASEFSTLCG VDTCVIVYGP SRAGDEMVME PELWPKDGSK VREILTKYRD TASSSCTKTY TVQECLEKNN
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM

Arabidopsis Description

At5g55690 [Source:UniProtKB/TrEMBL;Acc:Q9FM69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.