CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16660
KRH18859

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58890.1	KRH16660	AT1G77980.1	15805477
AT5G58890.1	KRH18859	AT1G77980.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37770	Soybean	cytosol	24.35	49.74
KRG93896	Soybean	nucleus	9.07	37.23
KRH44465	Soybean	nucleus	16.84	29.02
KRG93897	Soybean	mitochondrion	22.8	24.93
KRG93859	Soybean	mitochondrion	22.02	23.88
KRH18233	Soybean	nucleus	18.39	23.67
KRH47443	Soybean	nucleus	21.24	23.23
KRG93950	Soybean	nucleus	16.84	21.96
KRG93920	Soybean	mitochondrion	16.58	21.33
KRH42537	Soybean	nucleus	14.51	20.51
KRH58631	Soybean	nucleus	15.8	19.49
VIT_15s0021g02220.t01	Wine grape	nucleus	15.03	19.4
KRH42540	Soybean	nucleus	14.77	18.75
VIT_15s0021g02250.t01	Wine grape	nucleus	14.51	17.78
PGSC0003DMT400071682	Potato	nucleus	12.95	16.72
AT5G58890.1	Thale cress	nucleus	12.44	16.33
AT5G55690.1	Thale cress	nucleus	11.66	16.25
CDY36759	Canola	mitochondrion, nucleus	10.88	15.33
CDY11987	Canola	mitochondrion, nucleus	10.88	15.33
Bra028965.1-P	Field mustard	mitochondrion, nucleus	10.88	15.33
PGSC0003DMT400064120	Potato	nucleus	12.44	15.0
CDY54181	Canola	nucleus	11.14	14.29
Solyc01g103550.1.1	Tomato	nucleus	10.88	13.5
CDX80329	Canola	nucleus	10.36	13.29
Bra002611.1-P	Field mustard	nucleus	7.25	9.43

Protein Annotations

MapMan:15.5.14	UniProt:A0A0R0GCV5	EMBL:ACUP02009397	ncoils:Coil	EnsemblPlantsGene:GLYMA_15G196300	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	EnsemblPlants:KRH12811	ProteinID:KRH12811
ProteinID:KRH12811.1	PANTHER:PTHR11945	PANTHER:PTHR11945:SF176	UniParc:UPI0006EDE0CA	:	:

Description

hypothetical protein

Coordinates

chr15:+:22599850..22601294

Molecular Weight (calculated)

43820.3 Da

IEP (calculated)

4.655

GRAVY (calculated)

-0.607

Length

386 amino acids

Sequence
(BLAST)

001: MKKMTEFSNV CGVKACMIMY DGNYGDAPPL TWPQDDPIEV HSIIKRYESI KNEKLPKNFD LNNFFEIRKN MVDNDISKVQ KETLKIKYPT WHPSFNNLGV
101: EELRNFIARL DIKLEACNQR NEMSKHNHQN EANFNFMQSM VQSDSVAPNP SQLNFMQEIS QNQFSLAPMR PLNDGNQVAS YLLNLDIGSS SQSQMLNFDP
201: NLMQLIAKNQ GVMDITNQVV VPLACANQIN ALGNFTNQHD VPVDLTNHQL GECLDYFSQL DEIEDLTSQL NEIVNSGSQP GESIIWTNQH GVPVIGGSTT
301: AMNGATNYGT KFHGDEHNQE SSHCNYNEVV QSMQPYNYDA ALQNIASQSE NVQQIVTWPS LLPPKDEFQT DHYNKTLQNQ YSNHFI

Best Arabidopsis Sequence Match ( AT3G18650.1 )
(BLAST)

001: MASSSSSSLS FSTSKKNKTF FKKPNSAFSS SRATSLIKRQ QTVFKKAKEL SILCDIDVCV ICYGSNGELK TWPEEREKVK AIARRYGELS ETKRRKGSVD
101: LHEFLEKMNK DDPEKEEKKK IKVRRVPKVK YPVWDPRFDN YSVEQLMGLV QSLERNLTRI QHRTCAVVEA QGQRRVQYTN MANQELMMAN TMNQLQQHSN
201: QVSMYLWNHG NGAFSQIPVS ALASNQTQSL APIPPELMIY PNSDAGNYSG SLGVQGTGIN GLQNMNMLTY NNINSVNDFS KQFDQNSRAE SYSSLLGVHE
301: DGNNEFENPN MSSRNNFNVQ DCAGLLGMQG AGTNGLQSMN MHDYSNNNSI NSNGLSHQYV QFPTYNSQHQ DRVFNLDQNG NNTRSL

Arabidopsis Description

AGL103Agamous-like MADS-box protein AGL103 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.