CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16660
KRH18859

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58890.1	KRH16660	AT1G77980.1	15805477
AT5G58890.1	KRH18859	AT1G77980.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93859	Soybean	mitochondrion	64.59	64.04
KRG93896	Soybean	nucleus	15.58	58.51
KRH44465	Soybean	nucleus	27.48	43.3
KRH18233	Soybean	nucleus	34.84	41.0
KRG93950	Soybean	nucleus	30.59	36.49
KRG93920	Soybean	mitochondrion	30.31	35.67
KRH47443	Soybean	nucleus	34.28	34.28
KRH37770	Soybean	cytosol	13.03	24.34
KRH12811	Soybean	cytosol	24.93	22.8
KRH42537	Soybean	nucleus	16.15	20.88
PGSC0003DMT400071682	Potato	nucleus	15.86	18.73
AT5G55690.1	Thale cress	nucleus	14.45	18.41
VIT_15s0021g02220.t01	Wine grape	nucleus	15.3	18.06
KRH42540	Soybean	nucleus	15.3	17.76
VIT_15s0021g02250.t01	Wine grape	nucleus	15.01	16.83
CDY36759	Canola	mitochondrion, nucleus	13.03	16.79
CDY11987	Canola	mitochondrion, nucleus	13.03	16.79
Bra028965.1-P	Field mustard	mitochondrion, nucleus	13.03	16.79
KRH58631	Soybean	nucleus	14.73	16.61
Solyc01g103550.1.1	Tomato	nucleus	14.16	16.08
PGSC0003DMT400064120	Potato	nucleus	14.16	15.62
CDY54181	Canola	nucleus	13.31	15.61
AT5G58890.1	Thale cress	nucleus	12.75	15.31
CDX80329	Canola	nucleus	11.9	13.95
Bra002611.1-P	Field mustard	nucleus	7.65	9.09

Protein Annotations

MapMan:15.5.14	EMBL:ACUP02011641	EnsemblPlantsGene:GLYMA_19G047600	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:K7MWL2	EnsemblPlants:KRG93897
ProteinID:KRG93897	ProteinID:KRG93897.1	PFAM:PF00319	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF176
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00023D8D55	:

Description

hypothetical protein

Coordinates

chr19:-:7460680..7462076

Molecular Weight (calculated)

40004.1 Da

IEP (calculated)

5.202

GRAVY (calculated)

-0.614

Length

353 amino acids

Sequence
(BLAST)

001: MGRARITMKC ISNERCRLAT LKQRRNVLIR KIDQFTKMCG VEACLIVYDN DHVGPVTWPK EAVLVHSILQ KYESQKNERP PKTFGIEDFF ENRKNMVEAD
101: ISKVHKQISN IKYPTWDPSF INMEEKQLRA LITQVNAKIM ACDHVLQNKH QSEANNIMQN MAWGSASSSH IPSQITPTPN NNGRVYFTNS INQFDGASNH
201: GMNMQQVDAC FGYIPTMAQE SANATSSYPS QLNCLQNIPQ SQPIFEDLKP LNDKNEMVDF SNQVDVPLDS TNQLGLFMDW TNDQFGDFED WINRPIDWSN
301: QPGCGDVMGW DSQPNESIFQ NVPVQSQNEE QGGGALHVLP PPSDGFQSSN RLL

Best Arabidopsis Sequence Match ( AT5G55690.1 )
(BLAST)

001: MGRKMVKMTR ITNEKTRITT YKKRKACLYK KASEFSTLCG VDTCVIVYGP SRAGDEMVME PELWPKDGSK VREILTKYRD TASSSCTKTY TVQECLEKNN
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM

Arabidopsis Description

At5g55690 [Source:UniProtKB/TrEMBL;Acc:Q9FM69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.