CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16660
KRH18859

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58890.1	KRH16660	AT1G77980.1	15805477
AT5G58890.1	KRH18859	AT1G77980.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93896	Soybean	nucleus	23.21	55.32
KRH47443	Soybean	nucleus	61.61	39.09
KRG93950	Soybean	nucleus	43.3	32.77
KRH18233	Soybean	nucleus	41.07	30.67
KRG93859	Soybean	mitochondrion	45.98	28.93
KRG93897	Soybean	mitochondrion	43.3	27.48
KRG93920	Soybean	mitochondrion	34.38	25.67
KRH37770	Soybean	cytosol	18.3	21.69
KRH42537	Soybean	nucleus	25.0	20.51
KRH58631	Soybean	nucleus	28.12	20.13
VIT_15s0021g02220.t01	Wine grape	nucleus	26.79	20.07
KRH42540	Soybean	nucleus	26.79	19.74
PGSC0003DMT400071682	Potato	nucleus	26.34	19.73
VIT_15s0021g02250.t01	Wine grape	nucleus	26.79	19.05
AT5G55690.1	Thale cress	nucleus	20.98	16.97
KRH12811	Soybean	cytosol	29.02	16.84
CDY36759	Canola	mitochondrion, nucleus	20.09	16.42
CDY11987	Canola	mitochondrion, nucleus	20.09	16.42
Bra028965.1-P	Field mustard	mitochondrion, nucleus	20.09	16.42
Solyc01g103550.1.1	Tomato	nucleus	21.88	15.76
AT5G58890.1	Thale cress	nucleus	20.54	15.65
PGSC0003DMT400064120	Potato	nucleus	21.43	15.0
CDY54181	Canola	nucleus	20.09	14.95
CDX80329	Canola	nucleus	18.75	13.95
Bra002611.1-P	Field mustard	nucleus	8.93	6.73

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:ACUP02004928	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G212700	GO:GO:0000982
GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	UniProt:I1KVF3	InterPro:IPR002100	InterPro:IPR036879	EnsemblPlants:KRH44465
ProteinID:KRH44465	ProteinID:KRH44465.1	InterPro:MADS_SRF-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066
PANTHER:PTHR11945	PANTHER:PTHR11945:SF176	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI0002966CF8	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:17154120..17155641

Molecular Weight (calculated)

25991.0 Da

IEP (calculated)

7.347

GRAVY (calculated)

-0.664

Length

224 amino acids

Sequence
(BLAST)

001: MGRKRITLKP ISNERSRKST FKQRKEGLIT KISQLSTMCR VEACLIVYDE MNDDVGTMTW PKDPTLVRPI IENYESQRAE KPPNTFVIDD FFENRNNMIE
101: SEISKLHKQA REIKYPSWDP SLSNMGDEQL RAFIANVNAK IEACDQRIDM LKNTNQDEAN NINSMQNMHG SRQLNFMQNI SQSQIIPTPA EPLVLNDNNG
201: RVLNFANSTN QMDFKQITVI YFFF

Best Arabidopsis Sequence Match ( AT5G58890.1 )
(BLAST)

001: MVPKVVDLQR IANDKTRITT YKKRKASLYK KAQEFSTLCG VETCLIVYGP TKATDVVISE PEIWPKDETK VRAIIRKYKD TVSTSCRKET NVETFVNDVG
101: KGNEVVTKKR VKRENKYSSW EEKLDKCSRE QLHGIFCAVD SKLNEAVTRQ ERSMFRVNHQ AMDTPFPQNL MDQQFMPQYF HEQPQFQGFP NNFNNMGFSL
201: ISPHDGQIQM DPNLMEKWTD LALTQSLMMS KGNDGTQFMQ RQEQPYYNRE QVVSRSAGFN VNPFMGYQVP FNIPNWRLSG NQVENWELSG KKTI

Arabidopsis Description

AGL82Agamous-like MADS-box protein AGL82 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIM0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.