CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16660
KRH18859

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58890.1	KRH16660	AT1G77980.1	15805477
AT5G58890.1	KRH18859	AT1G77980.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93896	Soybean	nucleus	19.93	62.77
KRH44465	Soybean	nucleus	32.77	43.3
KRH18233	Soybean	nucleus	32.77	32.33
KRH47443	Soybean	nucleus	37.5	31.44
KRG93859	Soybean	mitochondrion	36.82	30.62
KRG93897	Soybean	mitochondrion	36.49	30.59
KRG93920	Soybean	mitochondrion	26.35	26.0
KRH37770	Soybean	cytosol	13.51	21.16
KRH42537	Soybean	nucleus	18.58	20.15
KRH42540	Soybean	nucleus	20.27	19.74
KRH58631	Soybean	nucleus	20.27	19.17
VIT_15s0021g02250.t01	Wine grape	nucleus	19.59	18.41
AT5G55690.1	Thale cress	nucleus	17.23	18.41
PGSC0003DMT400064120	Potato	nucleus	19.26	17.81
AT5G58890.1	Thale cress	nucleus	17.57	17.69
PGSC0003DMT400071682	Potato	nucleus	17.57	17.39
VIT_15s0021g02220.t01	Wine grape	nucleus	17.57	17.39
CDY54181	Canola	nucleus	17.23	16.94
KRH12811	Soybean	cytosol	21.96	16.84
Solyc01g103550.1.1	Tomato	nucleus	17.57	16.72
CDX80329	Canola	nucleus	16.22	15.95
CDY36759	Canola	mitochondrion, nucleus	14.53	15.69
CDY11987	Canola	mitochondrion, nucleus	14.53	15.69
Bra028965.1-P	Field mustard	mitochondrion, nucleus	14.53	15.69
Bra002611.1-P	Field mustard	nucleus	10.81	10.77

Protein Annotations

MapMan:15.5.14	UniProt:A0A0R0EV26	EMBL:ACUP02011657	EnsemblPlantsGene:GLYMA_19G051700	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	EnsemblPlants:KRG93950
ProteinID:KRG93950	ProteinID:KRG93950.1	PFAM:PF00319	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF176
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0006EDC083	:

Description

hypothetical protein

Coordinates

chr19:-:8438952..8439887

Molecular Weight (calculated)

33918.0 Da

IEP (calculated)

8.012

GRAVY (calculated)

-0.697

Length

296 amino acids

Sequence
(BLAST)

001: MGRARITLKH ISNERSRKTV SKQRKKGLIE KVSKFSTMFG DEACLIVYDD ENGDVGPVTW PQHPTLIHAI IQKYYEIQSK NERPQETFVI QDFFANRKKM
101: VEADISKVQK QIASIKYPTW DQSIRNIKEE KLRGLIAHVD SKIRGYDHRI NMLKNKHQSE AKFSFVQNMA QASGFSNHPS QILLNDDNRR VNFTNSMDQF
201: DGACNYGINN MMRNMQQGDA CFSFVPNMAQ ESSNATSSHV SHPSQLNCLQ NISQSQPVLE ALKPLSDKNE IVDSSNQVDA NQFVDLENWF DGPIDW

Best Arabidopsis Sequence Match ( AT5G55690.1 )
(BLAST)

001: MGRKMVKMTR ITNEKTRITT YKKRKACLYK KASEFSTLCG VDTCVIVYGP SRAGDEMVME PELWPKDGSK VREILTKYRD TASSSCTKTY TVQECLEKNN
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM

Arabidopsis Description

At5g55690 [Source:UniProtKB/TrEMBL;Acc:Q9FM69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.