CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16660
KRH18859

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58890.1	KRH16660	AT1G77980.1	15805477
AT5G58890.1	KRH18859	AT1G77980.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93896	Soybean	nucleus	21.33	68.09
KRG93920	Soybean	mitochondrion	52.33	52.33
KRH44465	Soybean	nucleus	30.67	41.07
KRG93859	Soybean	mitochondrion	44.67	37.64
KRG93897	Soybean	mitochondrion	41.0	34.84
KRG93950	Soybean	nucleus	32.33	32.77
KRH47443	Soybean	nucleus	36.33	30.88
KRH37770	Soybean	cytosol	15.33	24.34
KRH42537	Soybean	nucleus	21.33	23.44
VIT_15s0021g02220.t01	Wine grape	nucleus	20.67	20.74
KRH42540	Soybean	nucleus	20.67	20.39
KRH58631	Soybean	nucleus	20.0	19.17
AT5G55690.1	Thale cress	nucleus	17.33	18.77
KRH12811	Soybean	cytosol	23.67	18.39
VIT_15s0021g02250.t01	Wine grape	nucleus	19.0	18.1
AT5G58890.1	Thale cress	nucleus	16.67	17.01
CDY54181	Canola	nucleus	16.67	16.61
CDX80329	Canola	nucleus	16.0	15.95
Solyc01g103550.1.1	Tomato	nucleus	16.33	15.76
PGSC0003DMT400071682	Potato	nucleus	15.67	15.72
CDY36759	Canola	mitochondrion, nucleus	14.33	15.69
CDY11987	Canola	mitochondrion, nucleus	14.33	15.69
Bra028965.1-P	Field mustard	mitochondrion, nucleus	14.33	15.69
PGSC0003DMT400064120	Potato	nucleus	16.33	15.31
Bra002611.1-P	Field mustard	nucleus	6.67	6.73

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:ACUP02008048	EnsemblPlantsGene:GLYMA_13G045500	GO:GO:0000982	GO:GO:0000987
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	UniProt:I1LX34	InterPro:IPR002100	InterPro:IPR036879	EnsemblPlants:KRH18233	ProteinID:KRH18233
ProteinID:KRH18233.1	InterPro:MADS_SRF-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF176	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000233AC98

Description

hypothetical protein

Coordinates

chr13:-:13944035..13945818

Molecular Weight (calculated)

34123.1 Da

IEP (calculated)

4.498

GRAVY (calculated)

-0.540

Length

300 amino acids

Sequence
(BLAST)

001: MGRARISLKH ISNERSRKKT FMERRKVLIK KISEFSTLCG VEACLIVYDD GNGDIEPVTC PKDPVLAHSI LQNYEFQKNQ RPPKKFGIQD FVEDRKNIIE
101: AEISKVHKEI TNIKYPTSDP SFINMEEDQL RAFIALVDAK IRTCDHSLKN MHQSEANFMQ NMAWGSASSS HPTPMEPLNN NGRVDVTNSI DQVYEAMQLV
201: DAPFSYIPDM VQKSFNCLQN ISQSQPILDV EDEMVGFSNR VDVSLDTTNQ IADLLDWFDG PIIGWSDLVD WTSQPDESQN EQQGGGDLDG FQTECYNLNF

Best Arabidopsis Sequence Match ( AT5G55690.1 )
(BLAST)

001: MGRKMVKMTR ITNEKTRITT YKKRKACLYK KASEFSTLCG VDTCVIVYGP SRAGDEMVME PELWPKDGSK VREILTKYRD TASSSCTKTY TVQECLEKNN
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM

Arabidopsis Description

At5g55690 [Source:UniProtKB/TrEMBL;Acc:Q9FM69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.