CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16660
KRH18859

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58890.1	KRH16660	AT1G77980.1	15805477
AT5G58890.1	KRH18859	AT1G77980.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44465	Soybean	nucleus	39.09	61.61
KRG93896	Soybean	nucleus	15.58	58.51
KRG93859	Soybean	mitochondrion	38.53	38.2
KRG93950	Soybean	nucleus	31.44	37.5
KRH18233	Soybean	nucleus	30.88	36.33
KRG93897	Soybean	mitochondrion	34.28	34.28
KRG93920	Soybean	mitochondrion	23.8	28.0
KRH37770	Soybean	cytosol	12.46	23.28
VIT_15s0021g02220.t01	Wine grape	nucleus	18.41	21.74
PGSC0003DMT400071682	Potato	nucleus	18.41	21.74
KRH12811	Soybean	cytosol	23.23	21.24
VIT_15s0021g02250.t01	Wine grape	nucleus	18.7	20.95
KRH42537	Soybean	nucleus	15.58	20.15
KRH42540	Soybean	nucleus	16.71	19.41
AT5G55690.1	Thale cress	nucleus	15.01	19.13
KRH58631	Soybean	nucleus	16.15	18.21
Solyc01g103550.1.1	Tomato	nucleus	15.58	17.68
CDY36759	Canola	mitochondrion, nucleus	13.03	16.79
CDY11987	Canola	mitochondrion, nucleus	13.03	16.79
Bra028965.1-P	Field mustard	mitochondrion, nucleus	13.03	16.79
AT5G58890.1	Thale cress	nucleus	13.88	16.67
PGSC0003DMT400064120	Potato	nucleus	15.01	16.56
CDY54181	Canola	nucleus	13.31	15.61
CDX80329	Canola	nucleus	11.9	13.95
Bra002611.1-P	Field mustard	nucleus	6.23	7.41

Protein Annotations

EntrezGene:106799207	MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A0R0J4N4	EMBL:ACUP02004151	EnsemblPlantsGene:GLYMA_07G030200
GO:GO:0000982	GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	EnsemblPlants:KRH47443
ProteinID:KRH47443	ProteinID:KRH47443.1	InterPro:MADS_SRF-like	PFAM:PF00319	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF176	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000233820F
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:2410675..2411945

Molecular Weight (calculated)

39483.9 Da

IEP (calculated)

6.790

GRAVY (calculated)

-0.520

Length

353 amino acids

Sequence
(BLAST)

001: MGRARITLKP ISNERSRKST FKTRKEGLIT KISQLSTMCG VEACLIVYDD INGDVGAVTW PENPTLVRPI IENYERQRAE KPPKTFVIQD FFENRKNMVE
101: AEISKLHKQA REIKYPTWGP SLSNMEKEQL SAFIANVNAK IEACDQRIHI KSMQNMAKES ASSSHSSQLN FMQNISQSQM IPTHVEPLLN DNNNGRVLNS
201: TNQVGGASSH GVSMLRNIQQ GDVCVSYMPS MSQSQMIALE TFKSLKGKNK MVDFTNQVVV PLDSTNHQLG ESLDWANHHG SFDWANGPIG TEDWSNPLNG
301: DLVGSQPDES VLQNIPILSE NDHQGVVLPT LPLSLDGFQT DCRNMFFRMS NSK

Best Arabidopsis Sequence Match ( AT5G55690.1 )
(BLAST)

001: MGRKMVKMTR ITNEKTRITT YKKRKACLYK KASEFSTLCG VDTCVIVYGP SRAGDEMVME PELWPKDGSK VREILTKYRD TASSSCTKTY TVQECLEKNN
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM

Arabidopsis Description

At5g55690 [Source:UniProtKB/TrEMBL;Acc:Q9FM69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.