CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16660
KRH18859

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58890.1	KRH16660	AT1G77980.1	15805477
AT5G58890.1	KRH18859	AT1G77980.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93896	Soybean	nucleus	12.7	25.53
KRH12811	Soybean	cytosol	49.74	24.35
KRH44465	Soybean	nucleus	21.69	18.3
KRH42540	Soybean	nucleus	25.93	16.12
KRH18233	Soybean	nucleus	24.34	15.33
KRH58631	Soybean	nucleus	24.34	14.7
KRH42537	Soybean	nucleus	19.58	13.55
KRG93950	Soybean	nucleus	21.16	13.51
KRG93859	Soybean	mitochondrion	24.87	13.2
KRG93897	Soybean	mitochondrion	24.34	13.03
KRH47443	Soybean	nucleus	23.28	12.46
KRG93920	Soybean	mitochondrion	17.99	11.33
AT5G58890.1	Thale cress	nucleus	17.46	11.22
VIT_15s0021g02220.t01	Wine grape	nucleus	17.46	11.04
PGSC0003DMT400071682	Potato	nucleus	16.93	10.7
VIT_15s0021g02250.t01	Wine grape	nucleus	17.46	10.48
CDY54181	Canola	nucleus	16.4	10.3
PGSC0003DMT400064120	Potato	nucleus	16.4	9.69
AT5G55690.1	Thale cress	nucleus	13.76	9.39
Solyc01g103550.1.1	Tomato	nucleus	15.34	9.32
CDY36759	Canola	mitochondrion, nucleus	12.7	8.76
CDY11987	Canola	mitochondrion, nucleus	12.7	8.76
Bra028965.1-P	Field mustard	mitochondrion, nucleus	12.7	8.76
CDX80329	Canola	nucleus	13.76	8.64
Bra002611.1-P	Field mustard	nucleus	9.52	6.06

Protein Annotations

MapMan:15.5.14	UniProt:A0A0R0I5T8	EMBL:ACUP02005506	EnsemblPlantsGene:GLYMA_09G088200	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	EnsemblPlants:KRH37770	ProteinID:KRH37770	ProteinID:KRH37770.1
PANTHER:PTHR11945	PANTHER:PTHR11945:SF176	UniParc:UPI0006EDEF53	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:11621368..11622156

Molecular Weight (calculated)

21365.3 Da

IEP (calculated)

4.211

GRAVY (calculated)

-0.456

Length

189 amino acids

Sequence
(BLAST)

001: MTKMTEFSNV CGVKACMIMY DGNYGDAPPL TWPQDDPIEV HSIIKSFNNL GVEELRNFID RLDFKLEACK QQIEMSKHEH QNEANFSFMQ SMVQSESAAP
101: IPGQLNFMQE TSQNQFSLVP MRPPNDGNQA QMLNFDPNLM QLIAKNEGVV DITNQVDVPL DCANQINALG KLSNQHDMPV DLTNHLFDE

Best Arabidopsis Sequence Match ( AT1G22590.2 )
(BLAST)

001: MGRRKVTHQL ISDNATRRVT FRKRKDGLLK KIYELTVLCG LPACAIIYSE YKDGPELWPN LNEVRSILNR LSELPVEKQT KYMMDQKDLM NKMIQDAEKK
101: LEKEKMHTRA MKLGLMAGSN DLITDTDCSE ELARAADVVD KKLKAIRERI KAVEAGAPII KRD

Arabidopsis Description

AGL87AGAMOUS-like 87 [Source:UniProtKB/TrEMBL;Acc:Q7X9H1]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.