Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G58890.1 | KRH16660 | AT1G77980.1 | 15805477 |
| AT5G58890.1 | KRH18859 | AT1G77980.1 | 15805477 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH58631 | Soybean | nucleus | 66.78 | 64.86 |
| KRH42537 | Soybean | nucleus | 49.01 | 54.58 |
| KRG93896 | Soybean | nucleus | 9.87 | 31.91 |
| KRH44465 | Soybean | nucleus | 19.74 | 26.79 |
| KRH37770 | Soybean | cytosol | 16.12 | 25.93 |
| VIT_15s0021g02220.t01 | Wine grape | nucleus | 23.36 | 23.75 |
| PGSC0003DMT400071682 | Potato | nucleus | 22.7 | 23.08 |
| VIT_15s0021g02250.t01 | Wine grape | nucleus | 23.68 | 22.86 |
| Solyc01g103550.1.1 | Tomato | nucleus | 23.36 | 22.83 |
| AT5G55690.1 | Thale cress | nucleus | 20.72 | 22.74 |
| PGSC0003DMT400064120 | Potato | nucleus | 23.68 | 22.5 |
| CDY11987 | Canola | mitochondrion, nucleus | 20.07 | 22.26 |
| CDY36759 | Canola | mitochondrion, nucleus | 20.07 | 22.26 |
| Bra028965.1-P | Field mustard | mitochondrion, nucleus | 20.07 | 22.26 |
| CDX80329 | Canola | nucleus | 20.72 | 20.93 |
| CDY54181 | Canola | nucleus | 20.72 | 20.93 |
| KRH18233 | Soybean | nucleus | 20.39 | 20.67 |
| KRG93950 | Soybean | nucleus | 19.74 | 20.27 |
| AT5G58890.1 | Thale cress | nucleus | 19.41 | 20.07 |
| KRG93920 | Soybean | mitochondrion | 18.09 | 18.33 |
| KRH47443 | Soybean | nucleus | 19.41 | 16.71 |
| KRG93859 | Soybean | mitochondrion | 18.42 | 15.73 |
| KRG93897 | Soybean | mitochondrion | 17.76 | 15.3 |
| KRH12811 | Soybean | cytosol | 18.75 | 14.77 |
| Bra002611.1-P | Field mustard | nucleus | 9.87 | 10.1 |
Protein Annotations
| EntrezGene:102667033 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | EMBL:ACUP02004811 | EnsemblPlantsGene:GLYMA_08G095500 | GO:GO:0000982 |
| GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:K7L5R6 | EnsemblPlants:KRH42540 |
| ProteinID:KRH42540 | ProteinID:KRH42540.1 | InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF176 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI0002955F11 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr8:-:7270712..7271626
Molecular Weight (calculated)
35517.5 Da
IEP (calculated)
8.522
GRAVY (calculated)
-0.771
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MCLERMPMEL IQKEKARKTT FNKRKKGLLK KAYEFSILCA VDVGIIIYAP KFLDEPETWP QDQDSRELKR VIQKYQNTTS DRCPKVYSVQ EYFNDKMKKI
101: EGEISKVHKE KIKLMYPTWN DSYNTLGEEQ LRMFVSILDA KFDACSQRMN MLKKGKDKVE TLTPYMTSNV GMQNMSQTQF FPPSDNKQVA FYPFQLSQSS
201: QPSMFHFDKS CMQLMGKSTM VDWADQVGVD ANCDPKMGVV LKEDGSDKNQ NSYYNRNLPS HLQYDATFQT LPDQPRQPPG FELNGFYDSN MLQPHFFNYM
301: HGRN
101: EGEISKVHKE KIKLMYPTWN DSYNTLGEEQ LRMFVSILDA KFDACSQRMN MLKKGKDKVE TLTPYMTSNV GMQNMSQTQF FPPSDNKQVA FYPFQLSQSS
201: QPSMFHFDKS CMQLMGKSTM VDWADQVGVD ANCDPKMGVV LKEDGSDKNQ NSYYNRNLPS HLQYDATFQT LPDQPRQPPG FELNGFYDSN MLQPHFFNYM
301: HGRN
001: MGRKMVKMTR ITNEKTRITT YKKRKACLYK KASEFSTLCG VDTCVIVYGP SRAGDEMVME PELWPKDGSK VREILTKYRD TASSSCTKTY TVQECLEKNN
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM
Arabidopsis Description
At5g55690 [Source:UniProtKB/TrEMBL;Acc:Q9FM69]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.