Factsheet for Bra002611.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009436.1-P
Bra009911.1-P
Bra015643.1-P
Bra020524.1-P
Bra020525.1-P
Bra020550.1-P
Bra020552.1-P
Bra020600.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58890.1	Bra009911.1-P	AT1G31630.1	15805477
AT5G58890.1	Bra020524.1-P	AT1G31630.1	15805477
AT5G58890.1	Bra020525.1-P	AT1G31630.1	15805477
AT5G58890.1	Bra020550.1-P	AT1G31630.1	15805477
AT5G58890.1	Bra020552.1-P	AT1G31630.1	15805477
AT5G58890.1	Bra009436.1-P	AT1G46408.1	15805477
AT5G58890.1	Bra020600.1-P	AT1G48150.1	15805477
AT5G58890.1	Bra015643.1-P	AT1G77980.1	15805477
AT5G58890.1	Bra009436.1-P	AT5G04640.1	15805477
AT5G58890.1	Bra020600.1-P	AT5G27130.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54181	Canola	nucleus	64.65	63.79
AT5G58890.1	Thale cress	nucleus	29.97	30.27
Bra028965.1-P	Field mustard	mitochondrion, nucleus	12.12	13.14
VIT_15s0021g02250.t01	Wine grape	nucleus	13.13	12.38
VIT_15s0021g02220.t01	Wine grape	nucleus	12.12	12.04
KRG93950	Soybean	nucleus	10.77	10.81
KRH42540	Soybean	nucleus	10.1	9.87
KRH37770	Soybean	cytosol	6.06	9.52
PGSC0003DMT400085676	Potato	nucleus	7.07	9.21
KRH58631	Soybean	nucleus	9.43	8.95
KRH44465	Soybean	nucleus	6.73	8.93
Solyc11g020660.1.1	Tomato	nucleus	9.09	8.65
PGSC0003DMT400071001	Potato	nucleus	11.11	8.51
Solyc11g020320.1.1	Tomato	nucleus	7.41	8.0
KRG93897	Soybean	mitochondrion	9.09	7.65
KRH12811	Soybean	cytosol	9.43	7.25
Solyc11g020620.1.1	Tomato	nucleus	8.08	7.02
KRH42537	Soybean	nucleus	6.4	6.96
KRH18233	Soybean	nucleus	6.73	6.67
PGSC0003DMT400023977	Potato	nucleus	7.74	6.52
KRG93920	Soybean	mitochondrion	6.4	6.33
KRH47443	Soybean	nucleus	7.41	6.23
KRG93859	Soybean	mitochondrion	7.41	6.18
KRG93896	Soybean	nucleus	1.35	4.26

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra002611	EnsemblPlants:Bra002611.1	EnsemblPlants:Bra002611.1-P	ncoils:Coil
GO:GO:0000982	GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M4CEI0
InterPro:MADS_SRF-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF176
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000254392E	SEG:seg

Description

AT5G58890 (E=2e-089) AGL82 | AGL82 (AGAMOUS-LIKE 82); DNA binding / transcription factor

Coordinates

chrA10:+:8563452..8564345

Molecular Weight (calculated)

34609.0 Da

IEP (calculated)

8.365

GRAVY (calculated)

-0.888

Length

297 amino acids

Sequence
(BLAST)

001: MAHEKVVDLQ RITNDKTRMT TYKKRRACLY KKAGEFSTLC GVQTCLIVYG PTKATDEVIS KPEIWPEDET KARDIIRRYR DTASNSCRKE AHVETFVNDK
101: GKAKETENTN NNNNNNKRGM NNKNKYCCWE ERLEKCSQEQ LRGIFDDVGN KLHEAIMRQN RRAQHQAMEP QTPQNLMDPY YMSQYFAGYQ QQQCLMFPYH
201: NMSFPLFSPH DDQIPMEPIL VENFADSSGV NQGFMMSKGN ESTQFMQRQA PYYIEPVVQR SASFNVNPFT GYQVPYNVPR LPANQAEVWD FMAKKPI

Best Arabidopsis Sequence Match ( AT5G58890.1 )
(BLAST)

001: MVPKVVDLQR IANDKTRITT YKKRKASLYK KAQEFSTLCG VETCLIVYGP TKATDVVISE PEIWPKDETK VRAIIRKYKD TVSTSCRKET NVETFVNDVG
101: KGNEVVTKKR VKRENKYSSW EEKLDKCSRE QLHGIFCAVD SKLNEAVTRQ ERSMFRVNHQ AMDTPFPQNL MDQQFMPQYF HEQPQFQGFP NNFNNMGFSL
201: ISPHDGQIQM DPNLMEKWTD LALTQSLMMS KGNDGTQFMQ RQEQPYYNRE QVVSRSAGFN VNPFMGYQVP FNIPNWRLSG NQVENWELSG KKTI

Arabidopsis Description

AGL82Agamous-like MADS-box protein AGL82 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIM0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.