Factsheet for PGSC0003DMT400085676

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400003073
PGSC0003DMT400089615

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58890.1	PGSC0003DMT400003073	AT1G31630.1	15805477
AT5G58890.1	PGSC0003DMT400089615	AT1G31630.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g020320.1.1	Tomato	nucleus	53.51	44.36
PGSC0003DMT400071001	Potato	nucleus	65.35	38.4
PGSC0003DMT400023977	Potato	nucleus	53.07	34.28
AT5G55690.1	Thale cress	nucleus	21.49	17.69
PGSC0003DMT400071682	Potato	nucleus	22.81	17.39
Bra028965.1-P	Field mustard	mitochondrion, nucleus	17.98	14.96
CDY11987	Canola	mitochondrion, nucleus	17.98	14.96
CDY36759	Canola	mitochondrion, nucleus	17.98	14.96
PGSC0003DMT400064120	Potato	nucleus	20.61	14.69
AT5G58890.1	Thale cress	nucleus	18.86	14.63
CDY54181	Canola	nucleus	16.67	12.62
CDX80329	Canola	nucleus	15.35	11.63
Bra002611.1-P	Field mustard	nucleus	9.21	7.07

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M1DA13	PFAM:PF00319	EnsemblPlantsGene:PGSC0003DMG400035247
PGSC:PGSC0003DMG400035247	EnsemblPlants:PGSC0003DMT400085676	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF176	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000296134E	:	:	:

Description

Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400035247]

Coordinates

chr11:-:13686758..13687444

Molecular Weight (calculated)

26195.1 Da

IEP (calculated)

5.146

GRAVY (calculated)

-0.621

Length

228 amino acids

Sequence
(BLAST)

001: MTTLVTRKAG LVKKISELSI LCDIKTCMII HEGNNDQIWP NDPNEVTELI NLYKNQPFEG RTKRGKTLSN YFEDDQKKRA GIKVEKYPTW DSRFDYLCEK
101: ELQNLGGVVE KRMEKAKGKI ELLKSMNVHI GSSSLSHQQI WDNNLMNQTT TLWPISNLNS FTDYNNFFQS NIPISGVNSM GAGMDNGLLT IEDYQFCNAN
201: YSMMIEAENW SENDGRDLQK PSYIILEN

Best Arabidopsis Sequence Match ( AT3G18650.1 )
(BLAST)

001: MASSSSSSLS FSTSKKNKTF FKKPNSAFSS SRATSLIKRQ QTVFKKAKEL SILCDIDVCV ICYGSNGELK TWPEEREKVK AIARRYGELS ETKRRKGSVD
101: LHEFLEKMNK DDPEKEEKKK IKVRRVPKVK YPVWDPRFDN YSVEQLMGLV QSLERNLTRI QHRTCAVVEA QGQRRVQYTN MANQELMMAN TMNQLQQHSN
201: QVSMYLWNHG NGAFSQIPVS ALASNQTQSL APIPPELMIY PNSDAGNYSG SLGVQGTGIN GLQNMNMLTY NNINSVNDFS KQFDQNSRAE SYSSLLGVHE
301: DGNNEFENPN MSSRNNFNVQ DCAGLLGMQG AGTNGLQSMN MHDYSNNNSI NSNGLSHQYV QFPTYNSQHQ DRVFNLDQNG NNTRSL

Arabidopsis Description

AGL103Agamous-like MADS-box protein AGL103 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.