Factsheet for PGSC0003DMT400003073

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000383
PGSC0003DMT400003073
PGSC0003DMT400013136
PGSC0003DMT400023977
PGSC0003DMT400071001
PGSC0003DMT400072888
PGSC0003DMT400072891
PGSC0003DMT400085676
PGSC0003DMT400089615
PGSC0003DMT400094062
PGSC0003DMT400094816

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31630.1	PGSC0003DMT400013136	AT1G01530.1	15805477
AT1G31630.1	PGSC0003DMT400013136	AT1G65360.1	15805477
AT1G31630.1	PGSC0003DMT400072888	AT1G69120.1	15805477
AT1G31630.1	PGSC0003DMT400072891	AT2G03710.1	15805477
AT1G31630.1	PGSC0003DMT400094062	AT2G24840.1	18713950
AT1G31630.1	PGSC0003DMT400094816	AT2G24840.1	18713950
AT1G31630.1	PGSC0003DMT400000383	AT2G45650.1	15805477
AT1G31630.1	PGSC0003DMT400013136	AT4G36590.1	15805477
AT1G31630.1	PGSC0003DMT400003073	AT5G27960.1	15805477
AT1G31630.1	PGSC0003DMT400089615	AT5G27960.1	15805477
AT1G31630.1	PGSC0003DMT400023977	AT5G58890.1	15805477
AT1G31630.1	PGSC0003DMT400071001	AT5G58890.1	15805477
AT1G31630.1	PGSC0003DMT400085676	AT5G58890.1	15805477
AT1G31630.1	PGSC0003DMT400013136	AT5G60440.1	15805477
AT1G31640.1	PGSC0003DMT400013136	AT1G65360.1	15805477
AT1G31640.1	PGSC0003DMT400072888	AT1G69120.1	15805477
AT1G31640.1	PGSC0003DMT400072891	AT2G03710.1	15805477
AT1G31640.1	PGSC0003DMT400000383	AT2G45650.1	15805477
AT1G31640.1	PGSC0003DMT400003073	AT5G27960.1	15805477
AT1G31640.1	PGSC0003DMT400089615	AT5G27960.1	15805477
AT1G31640.1	PGSC0003DMT400013136	AT5G60440.1	15805477
AT1G65300.1	PGSC0003DMT400013136	AT1G01530.1	15805477
AT1G65300.1	PGSC0003DMT400094062	AT2G24840.1	18713950
AT1G65300.1	PGSC0003DMT400094816	AT2G24840.1	18713950
AT1G65300.1	PGSC0003DMT400013136	AT4G36590.1	15805477
AT1G65300.1	PGSC0003DMT400013136	AT5G60440.1	15805477
AT1G65330.1	PGSC0003DMT400013136	AT1G01530.1	15805477
AT1G65330.1	PGSC0003DMT400094062	AT2G24840.1	18713950
AT1G65330.1	PGSC0003DMT400094816	AT2G24840.1	18713950
AT1G65330.1	PGSC0003DMT400013136	AT4G36590.1	15805477
AT1G65330.1	PGSC0003DMT400013136	AT5G60440.1	15805477
AT3G05860.1	PGSC0003DMT400013136	AT4G36590.1	15805477
AT5G26650.1	PGSC0003DMT400013136	AT1G01530.1	15805477
AT5G26650.1	PGSC0003DMT400013136	AT5G60440.1	15805477
AT5G27960.1	PGSC0003DMT400003073	AT1G31630.1	15805477
AT5G27960.1	PGSC0003DMT400089615	AT1G31630.1	15805477
AT5G27960.1	PGSC0003DMT400003073	AT1G31640.1	15805477
AT5G27960.1	PGSC0003DMT400089615	AT1G31640.1	15805477
AT5G27960.1	PGSC0003DMT400013136	AT4G36590.1	15805477
AT5G27960.1	PGSC0003DMT400013136	AT5G60440.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400089787	Potato	cytosol	55.56	34.48
PGSC0003DMT400086956	Potato	nucleus	45.37	33.33
PGSC0003DMT400087890	Potato	cytosol	25.93	25.0
PGSC0003DMT400091650	Potato	nucleus	56.48	23.55
PGSC0003DMT400088008	Potato	nucleus	39.81	22.28
PGSC0003DMT400089454	Potato	nucleus	50.0	22.04
PGSC0003DMT400090516	Potato	nucleus	36.11	22.03
PGSC0003DMT400095417	Potato	cytosol	24.07	20.31
PGSC0003DMT400095062	Potato	nucleus	52.78	20.21
PGSC0003DMT400073719	Potato	nucleus	48.15	19.92
PGSC0003DMT400085623	Potato	nucleus	36.11	19.5
PGSC0003DMT400088654	Potato	nucleus	57.41	18.96
PGSC0003DMT400090586	Potato	nucleus	39.81	18.3
PGSC0003DMT400085256	Potato	nucleus	63.89	18.25
PGSC0003DMT400090953	Potato	nucleus	55.56	17.86
PGSC0003DMT400088489	Potato	nucleus	35.19	17.84
CDY64992	Canola	mitochondrion, nucleus	25.0	17.53
PGSC0003DMT400095755	Potato	nucleus	54.63	17.15
PGSC0003DMT400077258	Potato	nucleus	61.11	16.92
PGSC0003DMT400095426	Potato	mitochondrion	54.63	16.91
AT5G35120.1	Thale cress	cytosol	16.67	16.82
Bra005166.1-P	Field mustard	mitochondrion, nucleus	18.52	16.0
CDY71896	Canola	nucleus	25.0	15.7
PGSC0003DMT400086447	Potato	cytosol	27.78	15.62
HORVU6Hr1G003730.1	Barley	nucleus	12.04	15.29
GSMUA_Achr3P05500_001	Banana	nucleus	30.56	14.93
CDX80580	Canola	nucleus	27.78	14.85
TraesCS2B01G171700.1	Wheat	mitochondrion	25.93	14.66
TraesCS7B01G484600.1	Wheat	nucleus	22.22	14.63
AT1G59930.1	Thale cress	cytosol	17.59	14.39
PGSC0003DMT400061726	Potato	nucleus	43.52	14.37
Bra009913.1-P	Field mustard	nucleus	26.85	14.29
CDX88234	Canola	nucleus	24.07	14.21
AT5G26630.1	Thale cress	nucleus	27.78	13.76
KXG28893	Sorghum	nucleus	21.3	13.69
TraesCS7D01G550500.1	Wheat	nucleus	23.15	13.51
GSMUA_Achr3P08500_001	Banana	nucleus	28.7	13.48
TraesCS6A01G020500.1	Wheat	mitochondrion, nucleus	19.44	13.46
GSMUA_Achr3P24560_001	Banana	nucleus	28.7	13.36
TraesCS7A01G559500.1	Wheat	nucleus	23.15	13.09
KXG28892	Sorghum	nucleus	22.22	12.97
GSMUA_AchrUn_...	Banana	nucleus	27.78	12.88
PGSC0003DMT400086919	Potato	nucleus	28.7	12.6
PGSC0003DMT400061724	Potato	mitochondrion, nucleus	44.44	12.53
Bra020555.1-P	Field mustard	nucleus	25.0	12.5
CDY05540	Canola	nucleus	25.0	12.5
CDY25000	Canola	nucleus	25.0	12.5
TraesCS7B01G484000.1	Wheat	nucleus	21.3	12.43
TraesCS3D01G138400.1	Wheat	cytosol	21.3	12.11
TraesCS6A01G359700.1	Wheat	nucleus	25.0	11.89
TraesCS3B01G155200.1	Wheat	cytosol	21.3	11.79
GSMUA_Achr2P18400_001	Banana	nucleus	25.0	11.64
AT1G65300.1	Thale cress	nucleus	29.63	11.51
OQU83806	Sorghum	nucleus	18.52	11.43
TraesCS6B01G391600.1	Wheat	nucleus	25.93	11.43
TraesCS6B01G391700.1	Wheat	nucleus	25.93	11.43
HORVU6Hr1G085540.1	Barley	mitochondrion	24.07	11.35
CDX80577	Canola	mitochondrion, nucleus	31.48	11.3
CDX88231	Canola	nucleus	28.7	11.23
TraesCS6D01G341700.1	Wheat	nucleus	25.0	11.2
EES10067	Sorghum	mitochondrion	21.3	11.16
OQU83804	Sorghum	mitochondrion	24.07	11.06
TraesCS3A01G137500.1	Wheat	cytosol	20.37	11.06
TraesCS6D01G024000.1	Wheat	mitochondrion, nucleus	18.52	10.87
HORVU7Hr1G121600.1	Barley	nucleus	18.52	10.81
TraesCS3A01G312600.1	Wheat	nucleus	25.0	10.76
TraesCS3B01G159600.1	Wheat	nucleus	25.0	10.76
TraesCS6B01G028100.1	Wheat	mitochondrion	18.52	10.64
GSMUA_Achr8P06150_001	Banana	nucleus	24.07	10.61
TraesCS6D01G342000.1	Wheat	nucleus	23.15	10.37
TraesCS7A01G561000.1	Wheat	nucleus	22.22	10.26
TraesCS7B01G485400.1	Wheat	nucleus	22.22	10.26
Bra035448.1-P	Field mustard	nucleus	25.0	10.23
Bra035449.1-P	Field mustard	nucleus	25.0	10.23
TraesCS7D01G548500.1	Wheat	plastid	22.22	10.21
KXG28888	Sorghum	nucleus	24.07	10.2
KXG28890	Sorghum	mitochondrion	24.07	10.2
TraesCS6A01G358900.1	Wheat	nucleus	22.22	10.17
TraesCS7D01G551000.1	Wheat	nucleus	22.22	10.17
TraesCS6D01G341800.1	Wheat	mitochondrion, nucleus	23.15	10.08
Os03t0582400-01	Rice	nucleus	23.15	10.04
AT1G65330.1	Thale cress	nucleus	25.93	10.04
AT3G05860.1	Thale cress	nucleus	24.07	10.0
HORVU6Hr1G085570.1	Barley	mitochondrion, nucleus	24.07	10.0
PGSC0003DMT400094113	Potato	cytosol	15.74	9.83
Zm00001d048894_P001	Maize	mitochondrion	22.22	9.72
CDY38696	Canola	nucleus	25.0	9.71
Zm00001d013792_P001	Maize	mitochondrion, nucleus	25.0	9.71
TraesCS6B01G027900.1	Wheat	nucleus	20.37	9.69
TraesCS6D01G023800.1	Wheat	mitochondrion	20.37	9.69
TraesCS6A01G359100.1	Wheat	mitochondrion	23.15	9.58
TraesCS6D01G342100.1	Wheat	mitochondrion	23.15	9.58
TraesCS7D01G550600.1	Wheat	nucleus	21.3	9.54
KXG32310	Sorghum	nucleus	21.3	9.5
TraesCS2D01G128000.1	Wheat	nucleus	18.52	9.43
Bra009911.1-P	Field mustard	mitochondrion, nucleus	31.48	9.34
HORVU2Hr1G022060.1	Barley	nucleus, plastid	17.59	9.27
EES06917	Sorghum	mitochondrion, nucleus	22.22	9.27
KXG28889	Sorghum	nucleus	21.3	9.2
TraesCS7B01G484500.1	Wheat	nucleus	20.37	9.13
TraesCS6B01G028300.1	Wheat	mitochondrion	17.59	9.0
KXG38099	Sorghum	plastid	25.93	8.89
PGSC0003DMT400085114	Potato	cytosol, endoplasmic reticulum, nucleus	23.15	8.87
AT1G31630.1	Thale cress	mitochondrion	27.78	8.85
TraesCS6B01G391800.1	Wheat	mitochondrion	21.3	8.81
TraesCS6A01G022700.1	Wheat	mitochondrion	18.52	8.81
TraesCS6D01G024300.1	Wheat	mitochondrion	18.52	8.81
TraesCS7B01G484100.1	Wheat	mitochondrion, nucleus	19.44	8.71
Zm00001d016791_P001	Maize	mitochondrion	23.15	8.71
CDY27735	Canola	nucleus	21.3	8.61
TraesCS6A01G020900.1	Wheat	mitochondrion	16.67	8.53
AT2G28700.1	Thale cress	nucleus	25.93	8.51
AT5G27960.1	Thale cress	nucleus	25.0	8.44
TraesCS6D01G342700.1	Wheat	nucleus	24.07	8.41
TraesCS6B01G392600.1	Wheat	nucleus	23.15	8.06
CDY70782	Canola	nucleus	23.15	7.74
AT5G26650.1	Thale cress	nucleus	25.93	7.65
Bra020550.1-P	Field mustard	nucleus	26.85	7.63
Bra039404.1-P	Field mustard	nucleus	21.3	7.62
CDY67043	Canola	nucleus	26.85	7.42
CDY71564	Canola	nucleus	23.15	7.37
TraesCS7A01G551000.1	Wheat	nucleus	21.3	7.35
TraesCS7D01G536700.1	Wheat	nucleus	21.3	7.35
Bra020552.1-P	Field mustard	nucleus	23.15	7.33
EER91288	Sorghum	mitochondrion, nucleus	21.3	7.32
CDY18830	Canola	nucleus	23.15	7.27
AT5G26580.1	Thale cress	nucleus	21.3	6.67
Bra020524.1-P	Field mustard	nucleus	22.22	6.67
CDY05514	Canola	nucleus	22.22	6.67
CDY05333	Canola	nucleus	22.22	6.37
CDY05515	Canola	nucleus	22.22	6.37
HORVU6Hr1G085670.1	Barley	nucleus	19.44	6.33
TraesCS2D01G150900.1	Wheat	mitochondrion	17.59	6.19
Bra040248.1-P	Field mustard	nucleus	23.15	6.05
AT1G31640.1	Thale cress	mitochondrion	25.93	6.03
Bra020525.1-P	Field mustard	nucleus	21.3	5.82
PGSC0003DMT400094378	Potato	nucleus	8.33	5.77
TraesCS7A01G398800.1	Wheat	nucleus	16.67	5.59
TraesCS7B01G299400.1	Wheat	nucleus	16.67	5.57
TraesCS7D01G393000.1	Wheat	nucleus	16.67	5.57
TraesCS2B01G146100.1	Wheat	nucleus	18.52	5.51
TraesCS2A01G146400.1	Wheat	mitochondrion	17.59	5.34
GSMUA_Achr2P18410_001	Banana	nucleus	1.85	4.88
CDY05205	Canola	cytosol, mitochondrion, nucleus	6.48	4.29
PGSC0003DMT400061722	Potato	plastid	0.0	0.0
PGSC0003DMT400065010	Potato	vacuole	0.0	0.0
PGSC0003DMT400085093	Potato	extracellular, plastid, vacuole	0.0	0.0
PGSC0003DMT400089615	Potato	cytosol	0.0	0.0
PGSC0003DMT400091747	Potato	plastid	0.0	0.0
PGSC0003DMT400097522	Potato	cytosol, extracellular, mitochondrion, nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400003073	EnsemblPlantsGene:PGSC0003DMG400001219	ncoils:Coil	PANTHER:PTHR11945	PANTHER:PTHR11945:SF153	PGSC:PGSC0003DMG400001219
SEG:seg	UniParc:UPI00029616A5	UniProt:M0ZL41	MapMan:35.2	:	:

Description

Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001219]

Coordinates

chr6:+:26234508..26234834

Molecular Weight (calculated)

12563.3 Da

IEP (calculated)

5.245

GRAVY (calculated)

-0.457

Length

108 amino acids

Sequence
(BLAST)

001: MTLCEVEMVV INYNPYSDEP KVFPNHGGAI STFQNIKELA TSEISINMVT RDEFTEERIK KLEKNLLKVK KENRVKEITN EMHEVLNGKI ISLDMKPYDL
101: NDLSYLIK

Best Arabidopsis Sequence Match ( AT5G48670.1 )
(BLAST)

001: MTRKKVKLAY ISNDSSRKAT FKKRKKGLMK KVHELSTLCG ITACAIIYSP YDTNPEVWPS NSGVQRVVSE FRTLPEMDQH KKMVDQEGFL KQRIAKATET
101: LRRQRKDSRE LEMTEVMFQC LIGNMEMFHL NIVDLNDLGY MIEQYLKDVN RRIEILRNSG TEIGESSSVA VAASEGNIPM PNLVATTAPT TTIYEVGSSS
201: SFAAVANFVN PIDLQQFRHP AAQHVGLNEQ PQNLNLNLNQ NYNQNQEWFM EMMNHPEQMR YQTEQMGYQF MDDNHHNHIH HQPQEHQHQI HDESSNALDA
301: ANSSSIIPVT SSSITNKTWF H

Arabidopsis Description

AGL80Agamous-like MADS-box protein AGL80 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJK3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.