Factsheet for PGSC0003DMT400095426

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400089787	Potato	cytosol	40.69	81.61
PGSC0003DMT400085623	Potato	nucleus	41.83	73.0
PGSC0003DMT400090516	Potato	nucleus	36.96	72.88
PGSC0003DMT400094378	Potato	nucleus	30.66	68.59
PGSC0003DMT400095062	Potato	nucleus	55.3	68.44
PGSC0003DMT400094113	Potato	cytosol	31.81	64.16
PGSC0003DMT400091650	Potato	nucleus	47.56	64.09
PGSC0003DMT400090953	Potato	nucleus	61.32	63.69
PGSC0003DMT400095755	Potato	nucleus	60.17	61.05
PGSC0003DMT400088654	Potato	nucleus	56.45	60.24
PGSC0003DMT400003073	Potato	cytosol	16.91	54.63
PGSC0003DMT400086919	Potato	nucleus	35.82	50.81
PGSC0003DMT400088489	Potato	nucleus	30.09	49.3
PGSC0003DMT400086956	Potato	nucleus	18.91	44.9
GSMUA_Achr2P18410_001	Banana	nucleus	4.87	41.46
PGSC0003DMT400087890	Potato	cytosol	12.03	37.5
PGSC0003DMT400090586	Potato	nucleus	23.78	35.32
PGSC0003DMT400088008	Potato	nucleus	19.2	34.72
PGSC0003DMT400077258	Potato	nucleus	38.11	34.1
PGSC0003DMT400073719	Potato	nucleus	25.5	34.1
PGSC0003DMT400089454	Potato	nucleus	23.78	33.88
PGSC0003DMT400095417	Potato	cytosol	12.32	33.59
PGSC0003DMT400085256	Potato	nucleus	35.24	32.54
PGSC0003DMT400061726	Potato	nucleus	28.08	29.97
HORVU6Hr1G003730.1	Barley	nucleus	6.88	28.24
TraesCS7B01G484600.1	Wheat	nucleus	12.61	26.83
GSMUA_Achr3P24560_001	Banana	nucleus	17.77	26.72
PGSC0003DMT400061724	Potato	mitochondrion, nucleus	29.23	26.63
PGSC0003DMT400086447	Potato	cytosol	14.33	26.04
GSMUA_Achr3P05500_001	Banana	nucleus	16.33	25.79
TraesCS7A01G559500.1	Wheat	nucleus	13.47	24.61
AT1G22590.2	Thale cress	mitochondrion, nucleus	11.46	24.54
HORVU6Hr1G085540.1	Barley	mitochondrion	16.05	24.45
TraesCS6A01G020500.1	Wheat	mitochondrion, nucleus	10.89	24.36
HORVU7Hr1G121600.1	Barley	nucleus	12.89	24.32
Bra024521.1-P	Field mustard	mitochondrion	11.17	24.07
CDY04801	Canola	mitochondrion, nucleus	11.17	24.07
CDY21372	Canola	mitochondrion	11.17	24.07
TraesCS7B01G484000.1	Wheat	nucleus	12.61	23.78
Os03t0582400-01	Rice	nucleus	16.91	23.69
TraesCS6B01G391700.1	Wheat	nucleus	16.62	23.67
GSMUA_Achr3P08500_001	Banana	nucleus	15.47	23.48
Bra012335.1-P	Field mustard	mitochondrion	10.89	23.46
CDY25744	Canola	mitochondrion	10.89	23.46
TraesCS6B01G391600.1	Wheat	nucleus	16.33	23.27
TraesCS7D01G550500.1	Wheat	nucleus	12.32	23.24
TraesCS6D01G341700.1	Wheat	nucleus	16.05	23.24
TraesCS6D01G342000.1	Wheat	nucleus	16.05	23.24
TraesCS6A01G358900.1	Wheat	nucleus	15.47	22.88
GSMUA_Achr2P18400_001	Banana	nucleus	14.9	22.41
GSMUA_AchrUn_...	Banana	nucleus	14.9	22.32
TraesCS7A01G561000.1	Wheat	nucleus	14.9	22.22
TraesCS7B01G485400.1	Wheat	nucleus	14.9	22.22
TraesCS7D01G548500.1	Wheat	plastid	14.9	22.13
TraesCS7D01G551000.1	Wheat	nucleus	14.61	21.61
TraesCS3B01G155200.1	Wheat	cytosol	12.03	21.54
EES06917	Sorghum	mitochondrion, nucleus	15.47	20.85
GSMUA_Achr8P06150_001	Banana	nucleus	14.61	20.82
TraesCS7D01G550600.1	Wheat	nucleus	14.33	20.75
TraesCS6B01G027900.1	Wheat	nucleus	13.47	20.7
TraesCS6D01G023800.1	Wheat	mitochondrion	13.47	20.7
TraesCS6D01G341800.1	Wheat	mitochondrion, nucleus	14.61	20.56
KXG28892	Sorghum	nucleus	10.89	20.54
TraesCS3D01G138400.1	Wheat	cytosol	11.17	20.53
TraesCS2B01G171700.1	Wheat	mitochondrion	11.17	20.42
TraesCS7B01G484500.1	Wheat	nucleus	14.04	20.33
KXG32310	Sorghum	nucleus	14.04	20.25
KXG28893	Sorghum	nucleus	9.74	20.24
Zm00001d013792_P001	Maize	mitochondrion, nucleus	16.05	20.14
TraesCS3A01G137500.1	Wheat	cytosol	11.46	20.1
TraesCS6D01G024300.1	Wheat	mitochondrion	12.89	19.82
HORVU6Hr1G085570.1	Barley	mitochondrion, nucleus	14.61	19.62
TraesCS6D01G024000.1	Wheat	mitochondrion, nucleus	10.32	19.57
TraesCS6A01G359100.1	Wheat	mitochondrion	14.61	19.54
TraesCS6D01G342100.1	Wheat	mitochondrion	14.61	19.54
TraesCS7B01G484100.1	Wheat	mitochondrion, nucleus	13.47	19.5
EES10067	Sorghum	mitochondrion	11.46	19.42
TraesCS6A01G022700.1	Wheat	mitochondrion	12.61	19.38
PGSC0003DMT400085114	Potato	cytosol, endoplasmic reticulum, nucleus	15.47	19.15
TraesCS3B01G159600.1	Wheat	nucleus	13.75	19.12
OQU83806	Sorghum	nucleus	9.46	18.86
Zm00001d016791_P001	Maize	mitochondrion	15.47	18.82
KXG38099	Sorghum	plastid	16.91	18.73
TraesCS3A01G312600.1	Wheat	nucleus	13.47	18.73
TraesCS6B01G028100.1	Wheat	mitochondrion	10.03	18.62
TraesCS6B01G028300.1	Wheat	mitochondrion	11.17	18.48
TraesCS6B01G391800.1	Wheat	mitochondrion	13.47	18.01
PGSC0003DMT400089615	Potato	cytosol	12.03	17.65
TraesCS6A01G020900.1	Wheat	mitochondrion	10.6	17.54
KXG28890	Sorghum	mitochondrion	12.61	17.25
EER91288	Sorghum	mitochondrion, nucleus	15.19	16.88
KXG28888	Sorghum	nucleus	12.32	16.86
OQU83804	Sorghum	mitochondrion	10.89	16.17
HORVU2Hr1G022060.1	Barley	nucleus, plastid	9.46	16.1
TraesCS2D01G128000.1	Wheat	nucleus	9.74	16.04
TraesCS7D01G536700.1	Wheat	nucleus	14.33	15.97
TraesCS6A01G359700.1	Wheat	nucleus	10.32	15.86
Zm00001d048894_P001	Maize	mitochondrion	11.17	15.79
TraesCS7A01G551000.1	Wheat	nucleus	14.04	15.65
KXG28889	Sorghum	nucleus	11.17	15.6
TraesCS2D01G150900.1	Wheat	mitochondrion	12.32	14.01
TraesCS7B01G299400.1	Wheat	nucleus	12.03	13.0
TraesCS7D01G393000.1	Wheat	nucleus	12.03	13.0
TraesCS6D01G342700.1	Wheat	nucleus	11.46	12.95
TraesCS6B01G392600.1	Wheat	nucleus	11.46	12.9
TraesCS7A01G398800.1	Wheat	nucleus	11.75	12.73
PGSC0003DMT400061722	Potato	plastid	3.72	12.5
TraesCS2A01G146400.1	Wheat	mitochondrion	11.75	11.52
TraesCS2B01G146100.1	Wheat	nucleus	11.17	10.74
PGSC0003DMT400085093	Potato	extracellular, plastid, vacuole	6.02	10.45
PGSC0003DMT400065010	Potato	vacuole	5.73	10.0
HORVU6Hr1G085670.1	Barley	nucleus	9.46	9.94
PGSC0003DMT400097522	Potato	cytosol, extracellular, mitochondrion, nucleus	3.15	9.4
PGSC0003DMT400091747	Potato	plastid	3.44	7.89

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000982	GO:GO:0000987	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR036879	UniProt:M1DWA1	InterPro:MADS_SRF-like	PFAM:PF00319	EnsemblPlantsGene:PGSC0003DMG400044997
PGSC:PGSC0003DMG400044997	EnsemblPlants:PGSC0003DMT400095426	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF153
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000295A6AC	SEG:seg

Description

Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400044997]

Coordinates

chr5:+:39139534..39142691

Molecular Weight (calculated)

40586.5 Da

IEP (calculated)

10.350

GRAVY (calculated)

-0.586

Length

349 amino acids

Sequence
(BLAST)

001: MPLWRELWPL WRRHYSVVRA IVVGQRRLNV VNKPLNDLIS HFSTFRDKER TPGDFYSFFT ILEAKGVNPR QQNHNNNYYN KAIVSLISKQ THFSYPLSIA
101: RNKVKYALIE DASKTKISSN KRLKGLLKKS DDLKTLCDVE VATVIYGPYR NERFTFPNND VVRNTFIKFK ELPTLERSKN MVTRKEFIMQ RIKKLEEQLQ
201: KVRKENMVKE MTNEMYEVFK RKNVSVDMNP FDLNNLRCVI KKNLKKVHDL MIKENDEEGS TSNVPQPISE PMVPSRNNSE EPRDPSPLLF SQMFPAKVPQ
301: LFSPMPQNMA VGRPHGLTPP MPSTIMDSPI PSPMMDSLMP SPIIDSLMP

Best Arabidopsis Sequence Match ( AT1G65300.1 )
(BLAST)

001: MKRKMKLSLI ENSVSRKTTF TKRKKGMTKK LTELVTLCGV EACAVVYSPF NSIPEAWPSR EGVEDVVSKF MELSVLDRTK KMVDQETFIS QRIAKEKEQL
101: QKLRDENHNS QIRELMFGCL KGETNVYNLD GRDLQDLSLY IDKYLNGLTR RIEILIENGE SSSSLPLPIV ANAAAPVGFD GPMFQYHNQN QQKPVQFQYQ
201: ALYDFYDQIP KKIHGFNMNM NKDSNQSMVL DLNQNLNDGE DEGIPCMDNN NYHPEIDCLA TVTTAPTDVC APNITNDL

Arabidopsis Description

PHE2MADS-box transcription factor PHERES 2 [Source:UniProtKB/Swiss-Prot;Acc:Q7XJK8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.