Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400089787 | Potato | cytosol | 55.6 | 82.76 |
| PGSC0003DMT400003073 | Potato | cytosol | 23.55 | 56.48 |
| PGSC0003DMT400095062 | Potato | nucleus | 53.28 | 48.94 |
| PGSC0003DMT400088654 | Potato | nucleus | 61.0 | 48.32 |
| PGSC0003DMT400095426 | Potato | mitochondrion | 64.09 | 47.56 |
| PGSC0003DMT400086956 | Potato | nucleus | 26.25 | 46.26 |
| PGSC0003DMT400088489 | Potato | nucleus | 37.07 | 45.07 |
| PGSC0003DMT400090953 | Potato | nucleus | 55.21 | 42.56 |
| GSMUA_Achr2P18410_001 | Banana | nucleus | 6.56 | 41.46 |
| PGSC0003DMT400095755 | Potato | nucleus | 54.44 | 40.99 |
| PGSC0003DMT400090516 | Potato | nucleus | 26.64 | 38.98 |
| PGSC0003DMT400089454 | Potato | nucleus | 35.14 | 37.14 |
| PGSC0003DMT400085623 | Potato | nucleus | 25.87 | 33.5 |
| PGSC0003DMT400094113 | Potato | cytosol | 20.08 | 30.06 |
| HORVU6Hr1G003730.1 | Barley | nucleus | 9.65 | 29.41 |
| PGSC0003DMT400086919 | Potato | nucleus | 27.41 | 28.86 |
| PGSC0003DMT400090586 | Potato | nucleus | 25.1 | 27.66 |
| PGSC0003DMT400073719 | Potato | nucleus | 27.8 | 27.59 |
| PGSC0003DMT400077258 | Potato | nucleus | 40.93 | 27.18 |
| TraesCS7B01G484600.1 | Wheat | nucleus | 16.99 | 26.83 |
| PGSC0003DMT400087890 | Potato | cytosol | 11.2 | 25.89 |
| TraesCS6A01G020500.1 | Wheat | mitochondrion, nucleus | 15.44 | 25.64 |
| HORVU7Hr1G121600.1 | Barley | nucleus | 18.15 | 25.41 |
| Bra024521.1-P | Field mustard | mitochondrion | 15.83 | 25.31 |
| CDY04801 | Canola | mitochondrion, nucleus | 15.83 | 25.31 |
| CDY21372 | Canola | mitochondrion | 15.83 | 25.31 |
| AT1G22590.2 | Thale cress | mitochondrion, nucleus | 15.83 | 25.15 |
| PGSC0003DMT400088008 | Potato | nucleus | 18.53 | 24.87 |
| PGSC0003DMT400085256 | Potato | nucleus | 35.91 | 24.6 |
| GSMUA_Achr3P05500_001 | Banana | nucleus | 20.85 | 24.43 |
| TraesCS7A01G559500.1 | Wheat | nucleus | 17.76 | 24.08 |
| Bra012335.1-P | Field mustard | mitochondrion | 15.06 | 24.07 |
| CDY25744 | Canola | mitochondrion | 15.06 | 24.07 |
| GSMUA_Achr3P24560_001 | Banana | nucleus | 21.24 | 23.71 |
| KXG28892 | Sorghum | nucleus | 16.6 | 23.24 |
| TraesCS7B01G484000.1 | Wheat | nucleus | 16.22 | 22.7 |
| TraesCS7D01G550500.1 | Wheat | nucleus | 16.22 | 22.7 |
| OQU83806 | Sorghum | nucleus | 14.67 | 21.71 |
| GSMUA_Achr2P18400_001 | Banana | nucleus | 19.3 | 21.55 |
| PGSC0003DMT400061726 | Potato | nucleus | 27.03 | 21.41 |
| GSMUA_Achr3P08500_001 | Banana | nucleus | 18.92 | 21.3 |
| Os03t0582400-01 | Rice | nucleus | 20.46 | 21.29 |
| PGSC0003DMT400095417 | Potato | cytosol | 10.42 | 21.09 |
| HORVU6Hr1G085540.1 | Barley | mitochondrion | 18.53 | 20.96 |
| KXG28893 | Sorghum | nucleus | 13.51 | 20.83 |
| TraesCS6D01G341700.1 | Wheat | nucleus | 19.3 | 20.75 |
| TraesCS6D01G024000.1 | Wheat | mitochondrion, nucleus | 14.67 | 20.65 |
| GSMUA_AchrUn_... | Banana | nucleus | 18.53 | 20.6 |
| TraesCS3D01G138400.1 | Wheat | cytosol | 15.06 | 20.53 |
| PGSC0003DMT400094378 | Potato | nucleus | 12.36 | 20.51 |
| TraesCS6B01G391600.1 | Wheat | nucleus | 19.3 | 20.41 |
| TraesCS6B01G391700.1 | Wheat | nucleus | 19.3 | 20.41 |
| EES10067 | Sorghum | mitochondrion | 16.22 | 20.39 |
| TraesCS6A01G358900.1 | Wheat | nucleus | 18.53 | 20.34 |
| TraesCS3B01G155200.1 | Wheat | cytosol | 15.06 | 20.0 |
| TraesCS6D01G342000.1 | Wheat | nucleus | 18.53 | 19.92 |
| Zm00001d013792_P001 | Maize | mitochondrion, nucleus | 21.24 | 19.78 |
| TraesCS6B01G028100.1 | Wheat | mitochondrion | 14.29 | 19.68 |
| TraesCS2B01G171700.1 | Wheat | mitochondrion | 14.29 | 19.37 |
| TraesCS6D01G341800.1 | Wheat | mitochondrion, nucleus | 18.53 | 19.35 |
| TraesCS7A01G561000.1 | Wheat | nucleus | 17.37 | 19.23 |
| TraesCS7B01G485400.1 | Wheat | nucleus | 17.37 | 19.23 |
| TraesCS7D01G548500.1 | Wheat | plastid | 17.37 | 19.15 |
| TraesCS3A01G137500.1 | Wheat | cytosol | 14.67 | 19.1 |
| TraesCS7D01G551000.1 | Wheat | nucleus | 17.37 | 19.07 |
| KXG32310 | Sorghum | nucleus | 17.76 | 19.01 |
| TraesCS6B01G027900.1 | Wheat | nucleus | 16.6 | 18.94 |
| TraesCS6D01G023800.1 | Wheat | mitochondrion | 16.6 | 18.94 |
| EES06917 | Sorghum | mitochondrion, nucleus | 18.92 | 18.92 |
| PGSC0003DMT400061724 | Potato | mitochondrion, nucleus | 27.8 | 18.8 |
| GSMUA_Achr8P06150_001 | Banana | nucleus | 17.76 | 18.78 |
| TraesCS7D01G550600.1 | Wheat | nucleus | 17.37 | 18.67 |
| TraesCS6B01G028300.1 | Wheat | mitochondrion | 15.06 | 18.48 |
| TraesCS6A01G022700.1 | Wheat | mitochondrion | 15.83 | 18.06 |
| TraesCS6D01G024300.1 | Wheat | mitochondrion | 15.83 | 18.06 |
| TraesCS3A01G312600.1 | Wheat | nucleus | 17.37 | 17.93 |
| TraesCS3B01G159600.1 | Wheat | nucleus | 17.37 | 17.93 |
| KXG38099 | Sorghum | plastid | 21.62 | 17.78 |
| Zm00001d016791_P001 | Maize | mitochondrion | 19.69 | 17.77 |
| TraesCS6A01G020900.1 | Wheat | mitochondrion | 14.29 | 17.54 |
| TraesCS2D01G128000.1 | Wheat | nucleus | 14.29 | 17.45 |
| TraesCS7B01G484100.1 | Wheat | mitochondrion, nucleus | 16.22 | 17.43 |
| TraesCS7B01G484500.1 | Wheat | nucleus | 16.22 | 17.43 |
| HORVU6Hr1G085570.1 | Barley | mitochondrion, nucleus | 17.37 | 17.31 |
| KXG28890 | Sorghum | mitochondrion | 16.99 | 17.25 |
| HORVU2Hr1G022060.1 | Barley | nucleus, plastid | 13.51 | 17.07 |
| OQU83804 | Sorghum | mitochondrion | 15.44 | 17.02 |
| TraesCS6A01G359100.1 | Wheat | mitochondrion | 16.99 | 16.86 |
| TraesCS6D01G342100.1 | Wheat | mitochondrion | 16.99 | 16.86 |
| PGSC0003DMT400086447 | Potato | cytosol | 12.36 | 16.67 |
| Zm00001d048894_P001 | Maize | mitochondrion | 15.83 | 16.6 |
| TraesCS6B01G391800.1 | Wheat | mitochondrion | 16.6 | 16.48 |
| KXG28888 | Sorghum | nucleus | 16.22 | 16.47 |
| KXG28889 | Sorghum | nucleus | 15.83 | 16.4 |
| EER91288 | Sorghum | mitochondrion, nucleus | 18.92 | 15.61 |
| TraesCS6A01G359700.1 | Wheat | nucleus | 13.51 | 15.42 |
| TraesCS7A01G551000.1 | Wheat | nucleus | 18.15 | 15.02 |
| TraesCS7D01G536700.1 | Wheat | nucleus | 17.76 | 14.7 |
| TraesCS6D01G342700.1 | Wheat | nucleus | 15.44 | 12.95 |
| TraesCS6B01G392600.1 | Wheat | nucleus | 14.67 | 12.26 |
| TraesCS7D01G393000.1 | Wheat | nucleus | 15.06 | 12.07 |
| TraesCS2D01G150900.1 | Wheat | mitochondrion | 14.29 | 12.05 |
| TraesCS7B01G299400.1 | Wheat | nucleus | 14.29 | 11.46 |
| PGSC0003DMT400085114 | Potato | cytosol, endoplasmic reticulum, nucleus | 12.36 | 11.35 |
| TraesCS7A01G398800.1 | Wheat | nucleus | 13.9 | 11.18 |
| TraesCS2A01G146400.1 | Wheat | mitochondrion | 14.67 | 10.67 |
| TraesCS2B01G146100.1 | Wheat | nucleus | 14.29 | 10.19 |
| HORVU6Hr1G085670.1 | Barley | nucleus | 12.74 | 9.94 |
| PGSC0003DMT400061722 | Potato | plastid | 1.93 | 4.81 |
| PGSC0003DMT400089615 | Potato | cytosol | 4.25 | 4.62 |
| PGSC0003DMT400097522 | Potato | cytosol, extracellular, mitochondrion, nucleus | 1.54 | 3.42 |
| PGSC0003DMT400091747 | Potato | plastid | 1.93 | 3.29 |
| PGSC0003DMT400065010 | Potato | vacuole | 1.93 | 2.5 |
| PGSC0003DMT400085093 | Potato | extracellular, plastid, vacuole | 1.93 | 2.49 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR036879 | UniProt:M1DN38 | InterPro:MADS_SRF-like | PFAM:PF00319 | EnsemblPlantsGene:PGSC0003DMG400041221 |
| PGSC:PGSC0003DMG400041221 | EnsemblPlants:PGSC0003DMT400091650 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF153 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00029632B9 | : |
Description
Type I MADS box transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400041221]
Coordinates
chr5:+:43419172..43421058
Molecular Weight (calculated)
30125.4 Da
IEP (calculated)
9.815
GRAVY (calculated)
-0.816
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVGERGNFR QNSPSNAPRG GVNPRQENHN YYCYYNKAIL TLISKQTHFS SPLTTTRNKV NYAFIDDDSK RKISYNKRLK GLLKKSDELK TLCDVEVATV
101: IYGTYRNEPY TFPNNDVVRN TFIKFKELAT LDRSKNMVTR EEFTMQRIKK LEEQLQNVRK ENRVKEMTNE MYEVFERKAI SVDMNPSYLN DLRCVIKKNL
201: KQVRELTNVS SNGSTIFFSN ASTHGYWKNT WTDPSNAVNN NVFSDSFTND GFSIAFTND
101: IYGTYRNEPY TFPNNDVVRN TFIKFKELAT LDRSKNMVTR EEFTMQRIKK LEEQLQNVRK ENRVKEMTNE MYEVFERKAI SVDMNPSYLN DLRCVIKKNL
201: KQVRELTNVS SNGSTIFFSN ASTHGYWKNT WTDPSNAVNN NVFSDSFTND GFSIAFTND
001: MRGKMKLSFI ENDSVRKTTF TKRKKGMLKK FNELVTLCGV DACAVIRSPY NSIQEPWPSR EGVEEVMSKF MEFSVLDRTK KMVDQETFLR QRIAKETERL
101: QKLRDENRNS QIRDLMFGCL KGEVDVSHLH GRDLLDLNVF LNKYLNGVIR RVEILKENGE SSSSVPPPIG VAPTVVDASV PIGFDGRMIQ DQNQNQQEPV
201: QFQYQALYDF YDQIPKKLHD FNMKMNIDPN QSMNLDLNDG EDEGIPCMDN NNYHPEIDCL ATVTTAPTDV CAPNIINDL
101: QKLRDENRNS QIRDLMFGCL KGEVDVSHLH GRDLLDLNVF LNKYLNGVIR RVEILKENGE SSSSVPPPIG VAPTVVDASV PIGFDGRMIQ DQNQNQQEPV
201: QFQYQALYDF YDQIPKKLHD FNMKMNIDPN QSMNLDLNDG EDEGIPCMDN NNYHPEIDCL ATVTTAPTDV CAPNIINDL
Arabidopsis Description
PHE1MADS-box transcription factor PHERES 1 [Source:UniProtKB/Swiss-Prot;Acc:O80805]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.