Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G392600.1 | Wheat | nucleus | 95.47 | 95.16 |
| TraesCS6A01G359700.1 | Wheat | nucleus | 68.61 | 93.39 |
| HORVU6Hr1G085670.1 | Barley | nucleus | 76.05 | 70.78 |
| TraesCS6D01G024000.1 | Wheat | mitochondrion, nucleus | 30.1 | 50.54 |
| TraesCS7D01G393000.1 | Wheat | nucleus | 52.1 | 49.85 |
| TraesCS6D01G023800.1 | Wheat | mitochondrion | 35.28 | 48.02 |
| TraesCS2D01G128000.1 | Wheat | nucleus | 32.04 | 46.7 |
| GSMUA_Achr2P18410_001 | Banana | nucleus | 6.15 | 46.34 |
| TraesCS7D01G550600.1 | Wheat | nucleus | 33.98 | 43.57 |
| TraesCS7D01G550500.1 | Wheat | nucleus | 25.89 | 43.24 |
| TraesCS6D01G341700.1 | Wheat | nucleus | 32.36 | 41.49 |
| TraesCS6D01G342000.1 | Wheat | nucleus | 32.36 | 41.49 |
| TraesCS7D01G551000.1 | Wheat | nucleus | 31.39 | 41.1 |
| TraesCS6D01G342100.1 | Wheat | mitochondrion | 34.3 | 40.61 |
| TraesCS6D01G024300.1 | Wheat | mitochondrion | 29.77 | 40.53 |
| TraesCS2D01G150900.1 | Wheat | mitochondrion | 36.57 | 36.81 |
| TraesCS6D01G341800.1 | Wheat | mitochondrion, nucleus | 27.51 | 34.27 |
| KRG89836 | Soybean | nucleus | 15.53 | 32.21 |
| KRG88863 | Soybean | mitochondrion, nucleus | 14.56 | 32.14 |
| Zm00001d013792_P001 | Maize | mitochondrion, nucleus | 27.51 | 30.58 |
| EES06917 | Sorghum | mitochondrion, nucleus | 25.24 | 30.12 |
| TraesCS7D01G548500.1 | Wheat | plastid | 22.65 | 29.79 |
| TraesCS7D01G536700.1 | Wheat | nucleus | 29.45 | 29.07 |
| TraesCS3D01G138400.1 | Wheat | cytosol | 17.8 | 28.95 |
| KRH33740 | Soybean | nucleus | 14.89 | 28.93 |
| GSMUA_Achr3P08500_001 | Banana | nucleus | 21.04 | 28.26 |
| Zm00001d016791_P001 | Maize | mitochondrion | 26.21 | 28.22 |
| GSMUA_Achr2P18400_001 | Banana | nucleus | 21.04 | 28.02 |
| GSMUA_Achr3P24560_001 | Banana | nucleus | 20.71 | 27.59 |
| GSMUA_AchrUn_... | Banana | nucleus | 20.39 | 27.04 |
| KXG38099 | Sorghum | plastid | 27.51 | 26.98 |
| VIT_14s0060g00300.t01 | Wine grape | nucleus | 20.39 | 26.69 |
| Bra005166.1-P | Field mustard | mitochondrion, nucleus | 10.68 | 26.4 |
| GSMUA_Achr8P06150_001 | Banana | nucleus | 20.71 | 26.12 |
| EER91288 | Sorghum | mitochondrion, nucleus | 26.54 | 26.11 |
| KRG98152 | Soybean | nucleus | 15.86 | 25.79 |
| CDY33537 | Canola | nucleus | 16.18 | 25.51 |
| KRH30476 | Soybean | nucleus | 12.3 | 25.33 |
| KRG97962 | Soybean | nucleus | 19.42 | 25.1 |
| CDY64992 | Canola | mitochondrion, nucleus | 12.3 | 24.68 |
| KRG98149 | Soybean | nucleus | 16.83 | 24.41 |
| Bra012335.1-P | Field mustard | mitochondrion | 12.62 | 24.07 |
| Bra024521.1-P | Field mustard | mitochondrion | 12.62 | 24.07 |
| CDY04801 | Canola | mitochondrion, nucleus | 12.62 | 24.07 |
| CDY21372 | Canola | mitochondrion | 12.62 | 24.07 |
| CDY25744 | Canola | mitochondrion | 12.62 | 24.07 |
| PGSC0003DMT400003073 | Potato | cytosol | 8.41 | 24.07 |
| KRH30113 | Soybean | nucleus | 13.27 | 23.98 |
| KRH30919 | Soybean | nucleus | 18.77 | 23.97 |
| KRG98150 | Soybean | mitochondrion, nucleus | 12.95 | 23.95 |
| PGSC0003DMT400086956 | Potato | nucleus | 11.33 | 23.81 |
| KRH30473 | Soybean | mitochondrion, nucleus | 16.83 | 23.53 |
| AT5G26630.1 | Thale cress | nucleus | 16.5 | 23.39 |
| KRH72060 | Soybean | nucleus | 12.95 | 23.39 |
| AT1G22590.2 | Thale cress | mitochondrion, nucleus | 12.3 | 23.31 |
| Solyc01g102260.2.1 | Tomato | nucleus | 18.77 | 23.29 |
| KRG98143 | Soybean | nucleus | 15.86 | 23.22 |
| AT5G27810.1 | Thale cress | cytosol, nucleus, plastid | 8.74 | 22.69 |
| CDY71896 | Canola | nucleus | 12.62 | 22.67 |
| KRH30472 | Soybean | nucleus | 15.53 | 22.64 |
| KRG98142 | Soybean | nucleus | 19.42 | 22.47 |
| CDX88234 | Canola | nucleus | 13.27 | 22.4 |
| KRH30119 | Soybean | cytosol | 11.65 | 22.36 |
| CDX80580 | Canola | nucleus | 14.56 | 22.28 |
| KRH66052 | Soybean | mitochondrion, nucleus | 16.18 | 22.22 |
| Bra009913.1-P | Field mustard | nucleus | 14.56 | 22.17 |
| KRG98148 | Soybean | nucleus | 16.18 | 21.83 |
| PGSC0003DMT400089787 | Potato | cytosol | 11.97 | 21.26 |
| KRH66114 | Soybean | nucleus | 13.59 | 21.21 |
| Bra020555.1-P | Field mustard | nucleus | 14.56 | 20.83 |
| CDY05540 | Canola | nucleus | 14.56 | 20.83 |
| PGSC0003DMT400089454 | Potato | nucleus | 16.18 | 20.41 |
| CDY25000 | Canola | nucleus | 14.24 | 20.37 |
| KRG88915 | Soybean | mitochondrion, nucleus | 13.27 | 19.81 |
| AT3G05860.1 | Thale cress | nucleus | 16.18 | 19.23 |
| PGSC0003DMT400090586 | Potato | nucleus | 14.56 | 19.15 |
| KRG98147 | Soybean | mitochondrion, nucleus | 15.86 | 19.07 |
| KRH72066 | Soybean | mitochondrion, nucleus | 12.62 | 18.93 |
| AT5G35120.1 | Thale cress | cytosol | 6.47 | 18.69 |
| PGSC0003DMT400073719 | Potato | nucleus | 15.53 | 18.39 |
| AT1G65300.1 | Thale cress | nucleus | 16.5 | 18.35 |
| Bra018490.1-P | Field mustard | nucleus | 16.83 | 17.93 |
| CDX97329 | Canola | nucleus | 16.83 | 17.93 |
| PGSC0003DMT400088489 | Potato | nucleus | 12.3 | 17.84 |
| AT1G65330.1 | Thale cress | nucleus | 15.86 | 17.56 |
| Bra029469.1-P | Field mustard | nucleus | 17.15 | 17.43 |
| CDY60402 | Canola | nucleus | 17.15 | 17.43 |
| CDY27735 | Canola | nucleus | 14.89 | 17.23 |
| AT5G48670.1 | Thale cress | nucleus | 17.8 | 17.13 |
| Bra035448.1-P | Field mustard | nucleus | 14.56 | 17.05 |
| CDY38696 | Canola | nucleus | 15.21 | 16.91 |
| KRH30471 | Soybean | nucleus | 16.5 | 16.83 |
| AT1G59930.1 | Thale cress | cytosol | 7.12 | 16.67 |
| Bra035449.1-P | Field mustard | nucleus | 14.24 | 16.67 |
| KRG88862 | Soybean | nucleus | 16.5 | 16.29 |
| PGSC0003DMT400095062 | Potato | nucleus | 14.56 | 15.96 |
| Bra039404.1-P | Field mustard | nucleus | 15.53 | 15.89 |
| PGSC0003DMT400090953 | Potato | nucleus | 16.83 | 15.48 |
| PGSC0003DMT400091650 | Potato | nucleus | 12.95 | 15.44 |
| PGSC0003DMT400095755 | Potato | nucleus | 17.15 | 15.41 |
| PGSC0003DMT400090516 | Potato | nucleus | 8.74 | 15.25 |
| CDY18830 | Canola | nucleus | 16.83 | 15.12 |
| CDX80577 | Canola | mitochondrion, nucleus | 14.56 | 14.95 |
| KRG98146 | Soybean | nucleus | 15.86 | 14.94 |
| PGSC0003DMT400088654 | Potato | nucleus | 15.53 | 14.68 |
| CDY05207 | Canola | nucleus | 15.86 | 14.67 |
| CDY71564 | Canola | nucleus | 15.86 | 14.45 |
| PGSC0003DMT400087890 | Potato | cytosol | 5.18 | 14.29 |
| KRG88914 | Soybean | cytosol | 10.03 | 14.16 |
| PGSC0003DMT400061726 | Potato | nucleus | 14.89 | 14.07 |
| CDY27734 | Canola | nucleus | 15.21 | 13.99 |
| Bra041022.1-P | Field mustard | nucleus | 14.89 | 13.77 |
| CDX88231 | Canola | nucleus | 12.3 | 13.77 |
| AT2G28700.1 | Thale cress | nucleus | 14.56 | 13.68 |
| Bra020552.1-P | Field mustard | nucleus | 14.89 | 13.49 |
| PGSC0003DMT400088008 | Potato | nucleus | 8.41 | 13.47 |
| AT5G27960.1 | Thale cress | nucleus | 13.92 | 13.44 |
| CDY70782 | Canola | nucleus | 13.92 | 13.31 |
| PGSC0003DMT400095417 | Potato | cytosol | 5.5 | 13.28 |
| AT1G31630.1 | Thale cress | mitochondrion | 14.56 | 13.27 |
| PGSC0003DMT400085256 | Potato | nucleus | 16.18 | 13.23 |
| AT5G26650.1 | Thale cress | nucleus | 15.53 | 13.11 |
| PGSC0003DMT400061724 | Potato | mitochondrion, nucleus | 16.18 | 13.05 |
| AT5G26580.1 | Thale cress | nucleus | 14.56 | 13.04 |
| PGSC0003DMT400077258 | Potato | nucleus | 16.18 | 12.82 |
| Bra009911.1-P | Field mustard | mitochondrion, nucleus | 14.89 | 12.64 |
| Bra040248.1-P | Field mustard | nucleus | 16.83 | 12.59 |
| PGSC0003DMT400086919 | Potato | nucleus | 9.39 | 11.79 |
| CDY05333 | Canola | nucleus | 14.24 | 11.67 |
| CDY05515 | Canola | nucleus | 14.24 | 11.67 |
| PGSC0003DMT400085623 | Potato | nucleus | 7.44 | 11.5 |
| PGSC0003DMT400095426 | Potato | mitochondrion | 12.95 | 11.46 |
| Bra020525.1-P | Field mustard | nucleus | 14.24 | 11.14 |
| CDY67043 | Canola | nucleus | 13.59 | 10.74 |
| Bra020550.1-P | Field mustard | nucleus | 12.95 | 10.53 |
| PGSC0003DMT400086447 | Potato | cytosol | 6.47 | 10.42 |
| Bra020524.1-P | Field mustard | nucleus | 11.97 | 10.28 |
| CDY05514 | Canola | nucleus | 11.97 | 10.28 |
| PGSC0003DMT400094113 | Potato | cytosol | 5.18 | 9.25 |
| AT1G31640.1 | Thale cress | mitochondrion | 13.59 | 9.05 |
| Solyc07g043080.1.1 | Tomato | cytosol | 3.56 | 8.87 |
| PGSC0003DMT400094378 | Potato | nucleus | 4.21 | 8.33 |
| PGSC0003DMT400085114 | Potato | cytosol, endoplasmic reticulum, nucleus | 6.15 | 6.74 |
| PGSC0003DMT400089615 | Potato | cytosol | 4.53 | 5.88 |
| CDY05205 | Canola | cytosol, mitochondrion, nucleus | 2.91 | 5.52 |
| PGSC0003DMT400065010 | Potato | vacuole | 2.27 | 3.5 |
| PGSC0003DMT400085093 | Potato | extracellular, plastid, vacuole | 2.27 | 3.48 |
| PGSC0003DMT400091747 | Potato | plastid | 1.62 | 3.29 |
| PGSC0003DMT400097522 | Potato | cytosol, extracellular, mitochondrion, nucleus | 0.97 | 2.56 |
| PGSC0003DMT400061722 | Potato | plastid | 0.65 | 1.92 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 |
| InterPro:IPR036879 | InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF153 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS6D01G342700 |
| EnsemblPlants:TraesCS6D01G342700.1 | TIGR:cd00266 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6D:-:441810548..441811477
Molecular Weight (calculated)
33606.9 Da
IEP (calculated)
7.688
GRAVY (calculated)
-0.535
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MARKKIALQY IKNKSSRRRT LDTRMKNLAS KARELSILCN AKACVLVYDE GNAAPKVYPS HAEAADLLNR YRTMAEGRFK KTVNQEDFLS QRLSKLQVEE
101: NKVRDPEIRI LLHKAMLGSD LPDLKVDELT IVSSRLEEIL KSMGESIAKI SGQPPVLQPQ VPYIPDNVDM GGSSAMYQAS QPAPYVTNNM DMGPFAMNQQ
201: PSPTPYVTGS MHVGSPMMYQ VPPQHEGWLD KVRSGRDLDA LAHNGYNSAG HDGANTSTGA GYSTNGHDGA GTSANAGSSG GMKSLDVGFG WQSGGVDPEE
301: SSWSLFPPM
101: NKVRDPEIRI LLHKAMLGSD LPDLKVDELT IVSSRLEEIL KSMGESIAKI SGQPPVLQPQ VPYIPDNVDM GGSSAMYQAS QPAPYVTNNM DMGPFAMNQQ
201: PSPTPYVTGS MHVGSPMMYQ VPPQHEGWLD KVRSGRDLDA LAHNGYNSAG HDGANTSTGA GYSTNGHDGA GTSANAGSSG GMKSLDVGFG WQSGGVDPEE
301: SSWSLFPPM
001: MTRKKLNLSY ITNESMRKAT FNKRKKGLVK KIHELSVLCG IEACAVIYSP FNSNPEVWPS NSEVKNVMEN FEMLTKLEQE KKMVSHEGFI RQNISKTMES
101: NNKKMIDNAE RTMKEAMFQL LSGKGEKLNL TDRNREDLCK YIDQYLKELY HHKNKTINQS HIEPGESSGA TNAMTPTSVV EPIISSIQRP NQNPNFNHLS
201: HNQYQYQQQF GYPILVQDGI YNPSQIQNQH EEWLDDHMMN HSKEISHPLM DDNNFYYQQP
101: NNKKMIDNAE RTMKEAMFQL LSGKGEKLNL TDRNREDLCK YIDQYLKELY HHKNKTINQS HIEPGESSGA TNAMTPTSVV EPIISSIQRP NQNPNFNHLS
201: HNQYQYQQQF GYPILVQDGI YNPSQIQNQH EEWLDDHMMN HSKEISHPLM DDNNFYYQQP
Arabidopsis Description
MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4J9K3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.