Factsheet for Solyc01g102260.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc03g005240.1.1
Solyc04g025050.1.1
Solyc04g025970.1.1
Solyc06g053930.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48670.1	Solyc04g025970.1.1	AT2G24840.1	18599653
AT5G48670.1	Solyc04g025970.1.1	AT2G24840.1	18713950
AT5G48670.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT5G48670.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT5G48670.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT5G48670.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT5G48670.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT5G48670.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT5G48670.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT5G48670.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT5G48670.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT5G48670.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT5G48670.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT5G48670.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT5G48670.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT5G48670.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT5G48670.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT5G48670.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT5G48670.1	Solyc12g099990.1.1	AT5G21274.1	17360592
AT5G48670.1	Solyc04g025050.1.1	AT5G60440.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P18410_001	Banana	nucleus	12.05	73.17
VIT_14s0060g00300.t01	Wine grape	nucleus	65.06	68.64
KRG97962	Soybean	nucleus	56.22	58.58
CDY33537	Canola	nucleus	45.38	57.65
KRH30919	Soybean	nucleus	54.62	56.2
AT5G27810.1	Thale cress	cytosol, nucleus, plastid	25.7	53.78
KRG89836	Soybean	nucleus	31.33	52.35
KRG88863	Soybean	mitochondrion, nucleus	28.11	50.0
KRG98152	Soybean	nucleus	38.15	50.0
KRH30119	Soybean	cytosol	32.13	49.69
KRG98149	Soybean	nucleus	41.37	48.36
GSMUA_Achr3P05500_001	Banana	nucleus	40.96	46.15
KRH30476	Soybean	nucleus	27.71	46.0
KRG98150	Soybean	mitochondrion, nucleus	30.52	45.51
GSMUA_Achr3P08500_001	Banana	nucleus	41.37	44.78
Bra018490.1-P	Field mustard	nucleus	51.81	44.48
CDX97329	Canola	nucleus	51.81	44.48
KRH30473	Soybean	mitochondrion, nucleus	39.36	44.34
KRH72060	Soybean	nucleus	29.32	42.69
Bra029469.1-P	Field mustard	nucleus	51.81	42.43
CDY60402	Canola	nucleus	51.81	42.43
KRG98143	Soybean	nucleus	35.74	42.18
KRH66114	Soybean	nucleus	33.33	41.92
KRH30113	Soybean	nucleus	28.51	41.52
KRG98148	Soybean	nucleus	37.35	40.61
TraesCS6A01G020500.1	Wheat	mitochondrion, nucleus	25.3	40.38
GSMUA_Achr2P18400_001	Banana	nucleus	37.35	40.09
KRG98142	Soybean	nucleus	42.97	40.07
HORVU6Hr1G003730.1	Barley	nucleus	13.65	40.0
GSMUA_Achr3P24560_001	Banana	nucleus	36.95	39.66
GSMUA_AchrUn_...	Banana	nucleus	36.95	39.48
AT5G48670.1	Thale cress	nucleus	49.8	38.63
KRG98147	Soybean	mitochondrion, nucleus	39.76	38.52
KRH66052	Soybean	mitochondrion, nucleus	34.54	38.22
KRH30472	Soybean	nucleus	31.73	37.26
TraesCS7B01G484600.1	Wheat	nucleus	22.89	34.76
TraesCS3D01G138400.1	Wheat	cytosol	26.51	34.74
TraesCS3B01G155200.1	Wheat	cytosol	26.1	33.33
GSMUA_Achr8P06150_001	Banana	nucleus	32.53	33.06
KXG28892	Sorghum	nucleus	24.5	32.97
Zm00001d013792_P001	Maize	mitochondrion, nucleus	36.14	32.37
KRG88915	Soybean	mitochondrion, nucleus	26.91	32.37
TraesCS3A01G137500.1	Wheat	cytosol	25.7	32.16
TraesCS3B01G159600.1	Wheat	nucleus	32.13	31.87
CDY05207	Canola	nucleus	42.57	31.74
TraesCS6D01G024000.1	Wheat	mitochondrion, nucleus	23.29	31.52
TraesCS3A01G312600.1	Wheat	nucleus	31.73	31.47
Bra041022.1-P	Field mustard	nucleus	42.17	31.44
OQU83806	Sorghum	nucleus	22.09	31.43
TraesCS7A01G559500.1	Wheat	nucleus	24.1	31.41
HORVU7Hr1G121600.1	Barley	nucleus	23.29	31.35
Os03t0582400-01	Rice	nucleus	31.33	31.33
CDY27734	Canola	nucleus	42.17	31.25
KRH72066	Soybean	mitochondrion, nucleus	25.7	31.07
Zm00001d016791_P001	Maize	mitochondrion	35.74	31.01
KXG28893	Sorghum	nucleus	20.88	30.95
TraesCS6B01G028100.1	Wheat	mitochondrion	23.29	30.85
TraesCS7B01G484000.1	Wheat	nucleus	22.49	30.27
TraesCS7D01G548500.1	Wheat	plastid	28.51	30.21
TraesCS7D01G550500.1	Wheat	nucleus	22.09	29.73
TraesCS7B01G485400.1	Wheat	nucleus	27.71	29.49
TraesCS2B01G171700.1	Wheat	mitochondrion	22.49	29.32
TraesCS6B01G027900.1	Wheat	nucleus	26.51	29.07
TraesCS7A01G561000.1	Wheat	nucleus	27.31	29.06
TraesCS6D01G341700.1	Wheat	nucleus	28.11	29.05
TraesCS6B01G391600.1	Wheat	nucleus	28.51	28.98
TraesCS6B01G391700.1	Wheat	nucleus	28.51	28.98
EES06917	Sorghum	mitochondrion, nucleus	30.12	28.96
KXG38099	Sorghum	plastid	36.55	28.89
KRH30471	Soybean	nucleus	34.94	28.71
EES10067	Sorghum	mitochondrion	23.69	28.64
TraesCS6D01G023800.1	Wheat	mitochondrion	26.1	28.63
TraesCS6D01G342000.1	Wheat	nucleus	27.71	28.63
TraesCS6B01G028300.1	Wheat	mitochondrion	24.1	28.44
TraesCS6A01G358900.1	Wheat	nucleus	26.51	27.97
KRG98146	Soybean	nucleus	36.55	27.74
HORVU6Hr1G085570.1	Barley	mitochondrion, nucleus	28.92	27.69
TraesCS6A01G020900.1	Wheat	mitochondrion	23.29	27.49
KRG88862	Soybean	nucleus	34.54	27.48
TraesCS6B01G391800.1	Wheat	mitochondrion	28.51	27.2
TraesCS6D01G342100.1	Wheat	mitochondrion	28.51	27.2
HORVU6Hr1G085540.1	Barley	mitochondrion	24.9	27.07
KXG28890	Sorghum	mitochondrion	27.71	27.06
TraesCS7B01G484100.1	Wheat	mitochondrion, nucleus	26.1	26.97
TraesCS6A01G359100.1	Wheat	mitochondrion	28.11	26.82
TraesCS7D01G551000.1	Wheat	nucleus	25.3	26.69
KXG28888	Sorghum	nucleus	27.31	26.67
TraesCS7D01G550600.1	Wheat	nucleus	25.7	26.56
OQU83804	Sorghum	mitochondrion	24.9	26.38
EER91288	Sorghum	mitochondrion, nucleus	32.93	26.11
KXG32310	Sorghum	nucleus	25.3	26.03
KXG28889	Sorghum	nucleus	26.1	26.0
TraesCS6A01G022700.1	Wheat	mitochondrion	23.69	25.99
TraesCS2D01G128000.1	Wheat	nucleus	22.09	25.94
TraesCS7B01G484500.1	Wheat	nucleus	24.9	25.73
TraesCS6D01G024300.1	Wheat	mitochondrion	23.29	25.55
Zm00001d048894_P001	Maize	mitochondrion	25.3	25.51
HORVU2Hr1G022060.1	Barley	nucleus, plastid	20.88	25.37
TraesCS6D01G341800.1	Wheat	mitochondrion, nucleus	24.9	25.0
KRG88914	Soybean	cytosol	21.69	24.66
TraesCS6A01G359700.1	Wheat	nucleus	20.88	22.91
TraesCS7D01G536700.1	Wheat	nucleus	24.9	19.81
TraesCS7A01G551000.1	Wheat	nucleus	24.5	19.49
TraesCS7B01G299400.1	Wheat	nucleus	24.5	18.89
TraesCS6D01G342700.1	Wheat	nucleus	23.29	18.77
TraesCS7A01G398800.1	Wheat	nucleus	24.1	18.63
TraesCS7D01G393000.1	Wheat	nucleus	23.69	18.27
TraesCS6B01G392600.1	Wheat	nucleus	21.69	17.42
HORVU6Hr1G085670.1	Barley	nucleus	22.49	16.87
Solyc07g043080.1.1	Tomato	cytosol	8.03	16.13
TraesCS2D01G150900.1	Wheat	mitochondrion	19.28	15.64
TraesCS2A01G146400.1	Wheat	mitochondrion	21.69	15.17
TraesCS2B01G146100.1	Wheat	nucleus	21.69	14.88

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000982	GO:GO:0000987	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR036879	UniProt:K4B1F4	InterPro:MADS_SRF-like	PFAM:PF00319	PRINTS:PR00404
PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF355	SMART:SM00432	SUPFAM:SSF55455	EnsemblPlantsGene:Solyc01g102260.2
EnsemblPlants:Solyc01g102260.2.1	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002767A89	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:91091231..91092077

Molecular Weight (calculated)

27884.3 Da

IEP (calculated)

9.657

GRAVY (calculated)

-0.579

Length

249 amino acids

Sequence
(BLAST)

001: MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVSELSTLCG IDACAIIYSP YDTSPEVWPN TMGAQRVLAE FKRMPEMEQS KKMVNQESFI RQRIAKASEQ
101: LKKQSKENRE KEMTEVMYQG LTGKGLQNLN LGDLNDLGWV IDQNLKEVYK RIEAVKKGAS TSSSSSVAAA AVAAAAVASQ AVAPPMEQKP AVVELGLDSM
201: QRTQTEWFTD WMNSNASDQH IGYGHADEMI LPNFNDNHNA NVWPNNFYP

Best Arabidopsis Sequence Match ( AT5G48670.1 )
(BLAST)

001: MTRKKVKLAY ISNDSSRKAT FKKRKKGLMK KVHELSTLCG ITACAIIYSP YDTNPEVWPS NSGVQRVVSE FRTLPEMDQH KKMVDQEGFL KQRIAKATET
101: LRRQRKDSRE LEMTEVMFQC LIGNMEMFHL NIVDLNDLGY MIEQYLKDVN RRIEILRNSG TEIGESSSVA VAASEGNIPM PNLVATTAPT TTIYEVGSSS
201: SFAAVANFVN PIDLQQFRHP AAQHVGLNEQ PQNLNLNLNQ NYNQNQEWFM EMMNHPEQMR YQTEQMGYQF MDDNHHNHIH HQPQEHQHQI HDESSNALDA
301: ANSSSIIPVT SSSITNKTWF H

Arabidopsis Description

AGL80Agamous-like MADS-box protein AGL80 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJK3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.