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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0267900-01
Os01t0279300-01
Os01t0810300-01
Os02t0682200-01
Os03t0215400-01
Os03t0319300-01
Os03t0582400-01
Os03t0743500-02
Os03t0752800-02
Os04t0580700-01
Os05t0491000-01
Os05t0491100-01
Os06t0162800-01
Os06t0223300-01
Os07t0108900-02
Os07t0605200-01
Os07t0687200-02
Os08t0494100-02
Os12t0501700-00
Os12t0603800-00

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G31630.1 Os03t0752800-02 AT1G69120.1 15805477
AT1G31630.1 Os07t0108900-02 AT1G69120.1 15805477
AT1G31630.1 Os07t0605200-01 AT1G69120.1 15805477
AT1G31630.1 Os12t0501700-00 AT1G69120.1 15805477
AT1G31630.1 Os03t0215400-01 AT2G03710.1 15805477
AT1G31630.1 Os06t0162800-01 AT2G03710.1 15805477
AT1G31630.1 Os02t0682200-01 AT2G45650.1 15805477
AT1G31630.1 Os04t0580700-01 AT2G45650.1 15805477
AT1G31630.1 Os03t0582400-01 AT5G27960.1 15805477
AT1G31640.1 Os03t0752800-02 AT1G69120.1 15805477
AT1G31640.1 Os07t0108900-02 AT1G69120.1 15805477
AT1G31640.1 Os07t0605200-01 AT1G69120.1 15805477
AT1G31640.1 Os12t0501700-00 AT1G69120.1 15805477
AT1G31640.1 Os03t0215400-01 AT2G03710.1 15805477
AT1G31640.1 Os06t0162800-01 AT2G03710.1 15805477
AT1G31640.1 Os02t0682200-01 AT2G45650.1 15805477
AT1G31640.1 Os04t0580700-01 AT2G45650.1 15805477
AT1G31640.1 Os03t0582400-01 AT5G27960.1 15805477
AT5G27960.1 Os03t0582400-01 AT1G31630.1 15805477
AT5G27960.1 Os03t0582400-01 AT1G31640.1 15805477
AT5G27960.1 Os06t0223300-01 AT1G77980.1 15805477
AT5G27960.1 Os08t0494100-02 AT1G77980.1 15805477
AT5G48670.1 Os01t0267900-01 AT2G41090.1 17360592
AT5G48670.1 Os01t0279300-01 AT2G41090.1 17360592
AT5G48670.1 Os01t0810300-01 AT2G41090.1 17360592
AT5G48670.1 Os03t0319300-01 AT2G41090.1 17360592
AT5G48670.1 Os05t0491000-01 AT2G41090.1 17360592
AT5G48670.1 Os05t0491100-01 AT2G41090.1 17360592
AT5G48670.1 Os07t0687200-02 AT2G41090.1 17360592
AT5G48670.1 Os12t0603800-00 AT2G41090.1 17360592
AT5G48670.1 Os01t0267900-01 AT2G41100.1 17360592
AT5G48670.1 Os01t0279300-01 AT2G41100.1 17360592
AT5G48670.1 Os01t0810300-01 AT2G41100.1 17360592
AT5G48670.1 Os03t0319300-01 AT2G41100.1 17360592
AT5G48670.1 Os05t0491000-01 AT2G41100.1 17360592
AT5G48670.1 Os05t0491100-01 AT2G41100.1 17360592
AT5G48670.1 Os07t0687200-02 AT2G41100.1 17360592
AT5G48670.1 Os12t0603800-00 AT2G41100.1 17360592
AT5G48670.1 Os03t0743500-02 AT4G14640.1 17360592
AT5G48670.1 Os01t0267900-01 AT5G21274.1 17360592
AT5G48670.1 Os01t0279300-01 AT5G21274.1 17360592
AT5G48670.1 Os01t0810300-01 AT5G21274.1 17360592
AT5G48670.1 Os03t0319300-01 AT5G21274.1 17360592
AT5G48670.1 Os05t0491000-01 AT5G21274.1 17360592
AT5G48670.1 Os05t0491100-01 AT5G21274.1 17360592
AT5G48670.1 Os07t0687200-02 AT5G21274.1 17360592
AT5G48670.1 Os12t0603800-00 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr2P18410_001 Banana nucleus 10.84 65.85
TraesCS3D01G138400.1 Wheat cytosol 32.13 42.11
TraesCS3B01G155200.1 Wheat cytosol 32.53 41.54
TraesCS3A01G137500.1 Wheat cytosol 32.53 40.7
KRG88863 Soybean mitochondrion, nucleus 22.09 39.29
GSMUA_Achr2P18400_001 Banana nucleus 36.14 38.79
GSMUA_Achr3P08500_001 Banana nucleus 34.94 37.83
TraesCS7D01G548500.1 Wheat plastid 34.94 37.02
VIT_14s0060g00300.t01 Wine grape nucleus 34.94 36.86
GSMUA_AchrUn_... Banana nucleus 34.14 36.48
TraesCS7A01G561000.1 Wheat nucleus 34.14 36.32
TraesCS7B01G485400.1 Wheat nucleus 34.14 36.32
KRG89836 Soybean nucleus 20.88 34.9
AT5G27810.1 Thale cress cytosol, nucleus, plastid 16.47 34.45
CDY33537 Canola nucleus 26.51 33.67
KRH30476 Soybean nucleus 20.08 33.33
GSMUA_Achr3P24560_001 Banana nucleus 30.92 33.19
KRG97962 Soybean nucleus 31.73 33.05
KRH30919 Soybean nucleus 31.73 32.64
KRG98150 Soybean mitochondrion, nucleus 21.29 31.74
KRG98152 Soybean nucleus 24.1 31.58
Solyc01g102260.2.1 Tomato nucleus 31.33 31.33
CDX80580 Canola nucleus 24.9 30.69
PGSC0003DMT400086956 Potato nucleus 18.07 30.61
KRG98149 Soybean nucleus 26.1 30.52
PGSC0003DMT400089787 Potato cytosol 21.29 30.46
KRH33740 Soybean nucleus 19.28 30.19
KRH30113 Soybean nucleus 20.48 29.82
CDX88234 Canola nucleus 21.69 29.51
AT1G22590.2 Thale cress mitochondrion, nucleus 19.28 29.45
KRG98143 Soybean nucleus 24.9 29.38
AT5G26630.1 Thale cress nucleus 25.7 29.36
KRH72060 Soybean nucleus 20.08 29.24
KRH30473 Soybean mitochondrion, nucleus 25.7 28.96
Bra005166.1-P Field mustard mitochondrion, nucleus 14.46 28.8
Bra009913.1-P Field mustard nucleus 23.29 28.57
Bra012335.1-P Field mustard mitochondrion 18.47 28.4
CDY25744 Canola mitochondrion 18.47 28.4
KRH30472 Soybean nucleus 24.1 28.3
KRH30119 Soybean cytosol 18.07 27.95
CDY71896 Canola nucleus 19.28 27.91
Bra024521.1-P Field mustard mitochondrion 18.07 27.78
CDY04801 Canola mitochondrion, nucleus 18.07 27.78
CDY21372 Canola mitochondrion 18.07 27.78
KRG98142 Soybean nucleus 29.72 27.72
GSMUA_Achr8P06150_001 Banana nucleus 26.91 27.35
CDY64992 Canola mitochondrion, nucleus 16.87 27.27
KRH66114 Soybean nucleus 21.69 27.27
KRG98148 Soybean nucleus 24.9 27.07
KRH66052 Soybean mitochondrion, nucleus 23.69 26.22
Bra020555.1-P Field mustard nucleus 22.09 25.46
CDY05540 Canola nucleus 22.09 25.46
CDY25000 Canola nucleus 22.09 25.46
KRG98147 Soybean mitochondrion, nucleus 26.1 25.29
AT3G05860.1 Thale cress nucleus 25.7 24.62
Bra018490.1-P Field mustard nucleus 28.51 24.48
CDX97329 Canola nucleus 28.51 24.48
PGSC0003DMT400089454 Potato nucleus 23.69 24.08
AT1G65300.1 Thale cress nucleus 26.51 23.74
Bra029469.1-P Field mustard nucleus 28.92 23.68
CDY60402 Canola nucleus 28.92 23.68
PGSC0003DMT400003073 Potato cytosol 10.04 23.15
PGSC0003DMT400090586 Potato nucleus 21.69 22.98
CDY27735 Canola nucleus 24.5 22.85
AT1G65330.1 Thale cress nucleus 25.3 22.58
KRG88915 Soybean mitochondrion, nucleus 18.47 22.22
AT5G48670.1 Thale cress nucleus 28.51 22.12
PGSC0003DMT400088489 Potato nucleus 18.88 22.07
PGSC0003DMT400073719 Potato nucleus 22.49 21.46
PGSC0003DMT400087890 Potato cytosol 9.64 21.43
KRH72066 Soybean mitochondrion, nucleus 17.27 20.87
PGSC0003DMT400091650 Potato nucleus 21.29 20.46
PGSC0003DMT400090953 Potato nucleus 27.31 20.24
Bra039404.1-P Field mustard nucleus 24.5 20.2
PGSC0003DMT400088654 Potato nucleus 26.51 20.18
KRH30471 Soybean nucleus 24.5 20.13
CDX88231 Canola nucleus 22.09 19.93
CDY05207 Canola nucleus 26.51 19.76
AT5G35120.1 Thale cress cytosol 8.43 19.63
PGSC0003DMT400095062 Potato nucleus 22.09 19.5
CDX80577 Canola mitochondrion, nucleus 23.29 19.27
Bra041022.1-P Field mustard nucleus 25.7 19.16
CDY27734 Canola nucleus 25.3 18.75
KRG88914 Soybean cytosol 16.47 18.72
PGSC0003DMT400095755 Potato nucleus 25.7 18.6
CDY38696 Canola nucleus 20.48 18.35
KRG88862 Soybean nucleus 22.89 18.21
Bra035448.1-P Field mustard nucleus 19.28 18.18
PGSC0003DMT400095417 Potato cytosol 9.24 17.97
Bra035449.1-P Field mustard nucleus 18.88 17.8
AT5G27960.1 Thale cress nucleus 22.49 17.5
PGSC0003DMT400061726 Potato nucleus 22.89 17.43
KRG98146 Soybean nucleus 22.89 17.38
AT1G31630.1 Thale cress mitochondrion 23.29 17.11
PGSC0003DMT400095426 Potato mitochondrion 23.69 16.91
Bra009911.1-P Field mustard mitochondrion, nucleus 24.5 16.76
PGSC0003DMT400088008 Potato nucleus 12.85 16.58
AT5G26580.1 Thale cress nucleus 22.49 16.23
AT5G26650.1 Thale cress nucleus 23.69 16.12
PGSC0003DMT400061724 Potato mitochondrion, nucleus 24.5 15.93
AT1G59930.1 Thale cress cytosol 8.43 15.91
CDY18830 Canola nucleus 21.69 15.7
PGSC0003DMT400077258 Potato nucleus 24.5 15.64
PGSC0003DMT400085256 Potato nucleus 23.69 15.61
AT2G28700.1 Thale cress nucleus 20.48 15.5
CDY71564 Canola nucleus 20.08 14.75
PGSC0003DMT400090516 Potato nucleus 10.44 14.69
CDY05333 Canola nucleus 22.09 14.59
Bra020552.1-P Field mustard nucleus 19.28 14.08
CDY05515 Canola nucleus 20.88 13.79
CDY70782 Canola nucleus 17.67 13.62
PGSC0003DMT400086447 Potato cytosol 10.44 13.54
Bra020525.1-P Field mustard nucleus 20.88 13.16
Bra040248.1-P Field mustard nucleus 21.69 13.08
PGSC0003DMT400085623 Potato nucleus 10.44 13.0
Solyc07g043080.1.1 Tomato cytosol 6.43 12.9
AT1G31640.1 Thale cress mitochondrion 23.69 12.72
Bra020550.1-P Field mustard nucleus 18.88 12.37
CDY67043 Canola nucleus 18.88 12.02
PGSC0003DMT400086919 Potato nucleus 11.65 11.79
Bra020524.1-P Field mustard nucleus 16.47 11.39
CDY05514 Canola nucleus 16.47 11.39
CDY05205 Canola cytosol, mitochondrion, nucleus 7.23 11.04
PGSC0003DMT400085114 Potato cytosol, endoplasmic reticulum, nucleus 11.24 9.93
PGSC0003DMT400094378 Potato nucleus 6.02 9.62
PGSC0003DMT400094113 Potato cytosol 6.43 9.25
PGSC0003DMT400097522 Potato cytosol, extracellular, mitochondrion, nucleus 3.21 6.84
PGSC0003DMT400061722 Potato plastid 2.41 5.77
PGSC0003DMT400089615 Potato cytosol 5.22 5.46
PGSC0003DMT400085093 Potato extracellular, plastid, vacuole 4.02 4.98
PGSC0003DMT400065010 Potato vacuole 3.61 4.5
PGSC0003DMT400091747 Potato plastid 2.41 3.95
Protein Annotations
EntrezGene:107280316MapMan:15.5.14Gene3D:3.40.1810.10ProteinID:AAS07192.1ProteinID:ABF97316.1ncoils:Coil
ProteinID:EAZ27604.1GO:GO:0000982GO:GO:0000987GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0003700GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0045944GO:GO:0046983InterPro:IPR002100InterPro:IPR036879
InterPro:MADS_SRF-likeEnsemblPlantsGene:Os03g0582400EnsemblPlants:Os03t0582400-01PFAM:PF00319PRINTS:PR00404PFscan:PS50066
PANTHER:PTHR11945PANTHER:PTHR11945:SF153UniProt:Q75IC5SMART:SM00432SUPFAM:SSF55455InterPro:TF_MADSbox
InterPro:TF_MADSbox_sfUniParc:UPI00002394D5RefSeq:XP_015629573.1:::
Description
MADS BOX GENE 87, MADS box gene87, MADS box gene 87, MADS-box transcription factor 87MADS box transcription factor, Regulation of seed size, Heat stress response during reproductive development (Os03t0582400-01)
Coordinates
chr3:-:21428521..21429270
Molecular Weight (calculated)
27538.5 Da
IEP (calculated)
9.935
GRAVY (calculated)
-0.294
Length
249 amino acids
Sequence
(BLAST)
001: MARNKVKLQR IINDAKRRAT FKKRLKGLMK KASELATLCN VDTCLMVYGE GEAQATVVWP SESEVMRVLE RFKTLPQLDK YKKMTDLEGF IQERINKFQE
101: QLDKVRRDAD ESETKLLLIE ALEGRRPGLE GITIEQLTSL GWLVDARLNI VNDQLQKLHE QGLLPASISL PTMGVLPYTT AGYTVAQEAP IQRGGWLMGV
201: VRGIGSLGYS LFRGSGRSNT AGPSGDMVQP FNIGAGSSLA NQGISFPPK
Best Arabidopsis Sequence Match ( AT5G48670.1 )
(BLAST)
001: MTRKKVKLAY ISNDSSRKAT FKKRKKGLMK KVHELSTLCG ITACAIIYSP YDTNPEVWPS NSGVQRVVSE FRTLPEMDQH KKMVDQEGFL KQRIAKATET
101: LRRQRKDSRE LEMTEVMFQC LIGNMEMFHL NIVDLNDLGY MIEQYLKDVN RRIEILRNSG TEIGESSSVA VAASEGNIPM PNLVATTAPT TTIYEVGSSS
201: SFAAVANFVN PIDLQQFRHP AAQHVGLNEQ PQNLNLNLNQ NYNQNQEWFM EMMNHPEQMR YQTEQMGYQF MDDNHHNHIH HQPQEHQHQI HDESSNALDA
301: ANSSSIIPVT SSSITNKTWF H
Arabidopsis Description
AGL80Agamous-like MADS-box protein AGL80 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJK3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.