Factsheet for Bra040248.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18830	Canola	nucleus	83.29	100.0
Bra005166.1-P	Field mustard	mitochondrion, nucleus	21.07	69.6
GSMUA_Achr2P18410_001	Banana	nucleus	4.6	46.34
Bra035449.1-P	Field mustard	nucleus	29.54	46.21
Bra035448.1-P	Field mustard	nucleus	29.3	45.83
Bra039404.1-P	Field mustard	nucleus	31.48	43.05
HORVU6Hr1G003730.1	Barley	nucleus	7.02	34.12
Bra009913.1-P	Field mustard	nucleus	15.98	32.51
Bra020555.1-P	Field mustard	nucleus	16.46	31.48
TraesCS6A01G020500.1	Wheat	mitochondrion, nucleus	11.86	31.41
OQU83806	Sorghum	nucleus	12.59	29.71
Bra029469.1-P	Field mustard	nucleus	21.79	29.61
Bra018490.1-P	Field mustard	nucleus	20.58	29.31
KXG28892	Sorghum	nucleus	13.08	29.19
Bra024521.1-P	Field mustard	mitochondrion	11.14	28.4
GSMUA_Achr3P05500_001	Banana	nucleus	15.01	28.05
TraesCS6D01G024000.1	Wheat	mitochondrion, nucleus	12.35	27.72
EES10067	Sorghum	mitochondrion	13.8	27.67
HORVU7Hr1G121600.1	Barley	nucleus	12.11	27.03
GSMUA_Achr3P08500_001	Banana	nucleus	15.01	26.96
TraesCS7B01G484600.1	Wheat	nucleus	10.65	26.83
KXG28893	Sorghum	nucleus	10.9	26.79
TraesCS3D01G138400.1	Wheat	cytosol	12.11	26.32
GSMUA_Achr2P18400_001	Banana	nucleus	14.77	26.29
GSMUA_AchrUn_...	Banana	nucleus	14.77	26.18
TraesCS7D01G550500.1	Wheat	nucleus	11.62	25.95
TraesCS3B01G155200.1	Wheat	cytosol	12.11	25.64
TraesCS6A01G020900.1	Wheat	mitochondrion	13.08	25.59
Bra012335.1-P	Field mustard	mitochondrion	9.93	25.31
GSMUA_Achr8P06150_001	Banana	nucleus	15.01	25.31
TraesCS7A01G559500.1	Wheat	nucleus	11.62	25.13
GSMUA_Achr3P24560_001	Banana	nucleus	14.04	25.0
TraesCS6B01G028100.1	Wheat	mitochondrion	11.38	25.0
HORVU2Hr1G022060.1	Barley	nucleus, plastid	12.35	24.88
TraesCS7B01G484000.1	Wheat	nucleus	11.14	24.86
TraesCS6D01G023800.1	Wheat	mitochondrion	13.56	24.67
TraesCS6B01G027900.1	Wheat	nucleus	13.56	24.67
TraesCS6B01G028300.1	Wheat	mitochondrion	12.59	24.64
TraesCS3A01G137500.1	Wheat	cytosol	11.86	24.62
TraesCS6A01G358900.1	Wheat	nucleus	14.04	24.58
OQU83804	Sorghum	mitochondrion	13.8	24.26
TraesCS6B01G391600.1	Wheat	nucleus	14.29	24.08
TraesCS6B01G391700.1	Wheat	nucleus	14.29	24.08
KXG28889	Sorghum	nucleus	14.53	24.0
KXG28890	Sorghum	mitochondrion	14.77	23.92
TraesCS3B01G159600.1	Wheat	nucleus	14.53	23.9
Zm00001d048894_P001	Maize	mitochondrion	14.29	23.89
TraesCS7D01G548500.1	Wheat	plastid	13.56	23.83
Bra041022.1-P	Field mustard	nucleus	19.13	23.65
TraesCS2B01G171700.1	Wheat	mitochondrion	10.9	23.56
TraesCS7B01G485400.1	Wheat	nucleus	13.32	23.5
TraesCS7A01G561000.1	Wheat	nucleus	13.32	23.5
Zm00001d013792_P001	Maize	mitochondrion, nucleus	15.74	23.38
TraesCS6D01G024300.1	Wheat	mitochondrion	12.83	23.35
TraesCS6D01G342000.1	Wheat	nucleus	13.56	23.24
TraesCS6D01G341700.1	Wheat	nucleus	13.56	23.24
PGSC0003DMT400003073	Potato	cytosol	6.05	23.15
KXG32310	Sorghum	nucleus	13.56	23.14
KXG28888	Sorghum	nucleus	14.29	23.14
TraesCS6A01G022700.1	Wheat	mitochondrion	12.59	22.91
TraesCS2D01G128000.1	Wheat	nucleus	11.62	22.64
TraesCS6B01G391800.1	Wheat	mitochondrion	14.29	22.61
TraesCS6A01G359700.1	Wheat	nucleus	12.35	22.47
TraesCS3A01G312600.1	Wheat	nucleus	13.56	22.31
Zm00001d016791_P001	Maize	mitochondrion	15.5	22.3
HORVU6Hr1G085540.1	Barley	mitochondrion	12.35	22.27
TraesCS6A01G359100.1	Wheat	mitochondrion	14.04	22.22
TraesCS6D01G342100.1	Wheat	mitochondrion	14.04	22.22
HORVU6Hr1G085570.1	Barley	mitochondrion, nucleus	13.8	21.92
Os03t0582400-01	Rice	nucleus	13.08	21.69
EES06917	Sorghum	mitochondrion, nucleus	13.56	21.62
TraesCS7B01G484100.1	Wheat	mitochondrion, nucleus	12.59	21.58
TraesCS6D01G341800.1	Wheat	mitochondrion, nucleus	12.83	21.37
TraesCS7B01G484500.1	Wheat	nucleus	12.11	20.75
KXG38099	Sorghum	plastid	15.25	20.0
TraesCS7D01G550600.1	Wheat	nucleus	11.62	19.92
TraesCS7D01G551000.1	Wheat	nucleus	11.38	19.92
Bra009911.1-P	Field mustard	mitochondrion, nucleus	17.19	19.51
Bra020552.1-P	Field mustard	nucleus	15.74	19.06
EER91288	Sorghum	mitochondrion, nucleus	14.29	18.79
TraesCS7A01G398800.1	Wheat	nucleus	13.56	17.39
TraesCS7A01G551000.1	Wheat	nucleus	13.08	17.25
Bra020550.1-P	Field mustard	nucleus	15.74	17.11
TraesCS7B01G299400.1	Wheat	nucleus	13.32	17.03
TraesCS7D01G393000.1	Wheat	nucleus	13.32	17.03
TraesCS6D01G342700.1	Wheat	nucleus	12.59	16.83
TraesCS6B01G392600.1	Wheat	nucleus	12.59	16.77
TraesCS7D01G536700.1	Wheat	nucleus	12.59	16.61
Bra020525.1-P	Field mustard	nucleus	15.5	16.2
TraesCS2D01G150900.1	Wheat	mitochondrion	11.86	15.96
Bra020524.1-P	Field mustard	nucleus	13.08	15.0
HORVU6Hr1G085670.1	Barley	nucleus	11.86	14.76
TraesCS2B01G146100.1	Wheat	nucleus	12.11	13.77
TraesCS2A01G146400.1	Wheat	mitochondrion	11.86	13.76
PGSC0003DMT400089615	Potato	cytosol	2.42	4.2

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra040248	EnsemblPlants:Bra040248.1	EnsemblPlants:Bra040248.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
UniProt:M4FGM0	PFAM:PF00319	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF355	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002544CEE	SEG:seg	:

Description

AT2G28700 (E=1e-043) AGL46 | AGL46 (AGAMOUS-LIKE 46); DNA binding / transcription factor

Coordinates

chrA01:+:28302378..28303694

Molecular Weight (calculated)

46761.0 Da

IEP (calculated)

6.285

GRAVY (calculated)

-0.684

Length

413 amino acids

Sequence
(BLAST)

001: MTRKKTNLAY ISNVSARKRT LNLRKKGLLK KLDEIKTLCD VDACAVIYSP YNSTPEVWPS NSEVQKVMEK FENLPEEKQT KKSFNHEEFL NQTITKVQNQ
101: VKKLIEGNND KLMEELMFSC LNGNMGDLAI DDSNRGNLCE FIDGHLKKLY HHKNVILKNT HLETGESSSM AMAMGMPPVA MAEAGSSFFN SPQQTNESQP
201: LVTSNQGQEH ISSHGNQFLN VPTNFPQQPN EVQCAVSSNQ GLEHVPSLKN NFMCAPIFNS PLLTNESQPL VTSNHGPEHI CSHGSQFPNV PTFNFSQQTN
301: ELRHTISPNQ GLEHVHSLGN NFMNAPTFNS PQLTNEMQQP IIFSNQGANH VDSLASNLLP VSNHGVNTQV MNQDEVYYPL NQQDWYVKEM MEQSEPTCFP
401: WMEENHHYNH RQF

Best Arabidopsis Sequence Match ( AT2G28700.1 )
(BLAST)

001: MARKKLNLTY IFNDRMRKRS FKQRREGFLK KLNDLKVLCD VNACAVVYNP FNSNPDVWPS KSEVNNIIKK FEMLPETQKK VKSVNHEEFL NLYISKVEKQ
101: SKKLIVENKE TCLKEVMFKC LGGNMGDFVM NDNDRLDLCK FIDHYLRNLY HHKNVTLNNP NFEIGESSSL MDMAPTATTG NMATTVVDEG MTPLLIAEGS
201: SSSFLNSPLF NSPQLTNELQ LIVSQNHRLE NSLASNLFFS EGQDICIPDM NQSIIPSNQG AEHVDFLESN FLPNNNQEVY IPVMDQDEVY NPNQNHYENQ
301: QGFIDEMMKY AEKTSFPWMV ENHCYNHNQ

Arabidopsis Description

AGL46AGAMOUS-like 46 [Source:UniProtKB/TrEMBL;Acc:F4IIT6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.