Factsheet for HORVU6Hr1G085540.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G001280.1
HORVU0Hr1G032300.1
HORVU2Hr1G016740.4
HORVU2Hr1G022060.1
HORVU2Hr1G063800.7
HORVU3Hr1G038010.1
HORVU3Hr1G079210.4
HORVU4Hr1G003610.5
HORVU4Hr1G026290.3
HORVU4Hr1G067680.14
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4
HORVU5Hr1G095630.3
HORVU6Hr1G003730.1
HORVU6Hr1G066140.9
HORVU6Hr1G085540.1
HORVU6Hr1G085570.1
HORVU6Hr1G085670.1
HORVU7Hr1G025700.6
HORVU7Hr1G121600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31630.1	HORVU2Hr1G063800.7	AT1G69120.1	15805477
AT1G31630.1	HORVU5Hr1G095630.3	AT1G69120.1	15805477
AT1G31630.1	HORVU4Hr1G067680.14	AT2G03710.1	15805477
AT1G31630.1	HORVU7Hr1G025700.6	AT2G03710.1	15805477
AT1G31630.1	HORVU0Hr1G032300.1	AT2G45650.1	15805477
AT1G31630.1	HORVU6Hr1G066140.9	AT2G45650.1	15805477
AT1G31630.1	HORVU2Hr1G022060.1	AT5G27960.1	15805477
AT1G31630.1	HORVU6Hr1G003730.1	AT5G27960.1	15805477
AT1G31630.1	HORVU6Hr1G085540.1	AT5G27960.1	15805477
AT1G31630.1	HORVU6Hr1G085570.1	AT5G27960.1	15805477
AT1G31630.1	HORVU6Hr1G085670.1	AT5G27960.1	15805477
AT1G31630.1	HORVU7Hr1G121600.1	AT5G27960.1	15805477
AT1G31640.1	HORVU2Hr1G063800.7	AT1G69120.1	15805477
AT1G31640.1	HORVU5Hr1G095630.3	AT1G69120.1	15805477
AT1G31640.1	HORVU4Hr1G067680.14	AT2G03710.1	15805477
AT1G31640.1	HORVU7Hr1G025700.6	AT2G03710.1	15805477
AT1G31640.1	HORVU0Hr1G032300.1	AT2G45650.1	15805477
AT1G31640.1	HORVU6Hr1G066140.9	AT2G45650.1	15805477
AT1G31640.1	HORVU2Hr1G022060.1	AT5G27960.1	15805477
AT1G31640.1	HORVU6Hr1G003730.1	AT5G27960.1	15805477
AT1G31640.1	HORVU6Hr1G085540.1	AT5G27960.1	15805477
AT1G31640.1	HORVU6Hr1G085570.1	AT5G27960.1	15805477
AT1G31640.1	HORVU6Hr1G085670.1	AT5G27960.1	15805477
AT1G31640.1	HORVU7Hr1G121600.1	AT5G27960.1	15805477
AT5G27960.1	HORVU2Hr1G022060.1	AT1G31630.1	15805477
AT5G27960.1	HORVU6Hr1G003730.1	AT1G31630.1	15805477
AT5G27960.1	HORVU6Hr1G085540.1	AT1G31630.1	15805477
AT5G27960.1	HORVU6Hr1G085570.1	AT1G31630.1	15805477
AT5G27960.1	HORVU6Hr1G085670.1	AT1G31630.1	15805477
AT5G27960.1	HORVU7Hr1G121600.1	AT1G31630.1	15805477
AT5G27960.1	HORVU2Hr1G022060.1	AT1G31640.1	15805477
AT5G27960.1	HORVU6Hr1G003730.1	AT1G31640.1	15805477
AT5G27960.1	HORVU6Hr1G085540.1	AT1G31640.1	15805477
AT5G27960.1	HORVU6Hr1G085570.1	AT1G31640.1	15805477
AT5G27960.1	HORVU6Hr1G085670.1	AT1G31640.1	15805477
AT5G27960.1	HORVU7Hr1G121600.1	AT1G31640.1	15805477
AT5G27960.1	HORVU4Hr1G003610.5	AT1G77980.1	15805477
AT5G48670.1	HORVU0Hr1G001280.1	AT2G41090.1	17360592
AT5G48670.1	HORVU2Hr1G016740.4	AT2G41090.1	17360592
AT5G48670.1	HORVU3Hr1G038010.1	AT2G41090.1	17360592
AT5G48670.1	HORVU3Hr1G079210.4	AT2G41090.1	17360592
AT5G48670.1	HORVU4Hr1G026290.3	AT2G41090.1	17360592
AT5G48670.1	HORVU5Hr1G014060.1	AT2G41090.1	17360592
AT5G48670.1	HORVU5Hr1G014070.2	AT2G41090.1	17360592
AT5G48670.1	HORVU5Hr1G044710.4	AT2G41090.1	17360592
AT5G48670.1	HORVU0Hr1G001280.1	AT2G41100.1	17360592
AT5G48670.1	HORVU2Hr1G016740.4	AT2G41100.1	17360592
AT5G48670.1	HORVU3Hr1G038010.1	AT2G41100.1	17360592
AT5G48670.1	HORVU3Hr1G079210.4	AT2G41100.1	17360592
AT5G48670.1	HORVU4Hr1G026290.3	AT2G41100.1	17360592
AT5G48670.1	HORVU5Hr1G014060.1	AT2G41100.1	17360592
AT5G48670.1	HORVU5Hr1G014070.2	AT2G41100.1	17360592
AT5G48670.1	HORVU5Hr1G044710.4	AT2G41100.1	17360592
AT5G48670.1	HORVU0Hr1G001280.1	AT5G21274.1	17360592
AT5G48670.1	HORVU2Hr1G016740.4	AT5G21274.1	17360592
AT5G48670.1	HORVU3Hr1G038010.1	AT5G21274.1	17360592
AT5G48670.1	HORVU3Hr1G079210.4	AT5G21274.1	17360592
AT5G48670.1	HORVU4Hr1G026290.3	AT5G21274.1	17360592
AT5G48670.1	HORVU5Hr1G014060.1	AT5G21274.1	17360592
AT5G48670.1	HORVU5Hr1G014070.2	AT5G21274.1	17360592
AT5G48670.1	HORVU5Hr1G044710.4	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G341700.1	Wheat	nucleus	81.22	77.18
TraesCS6D01G342000.1	Wheat	nucleus	80.79	76.76
TraesCS6A01G358900.1	Wheat	nucleus	74.67	72.46
TraesCS6B01G391600.1	Wheat	nucleus	76.86	71.84
TraesCS6B01G391700.1	Wheat	nucleus	76.86	71.84
TraesCS6D01G341800.1	Wheat	mitochondrion, nucleus	69.0	63.71
HORVU7Hr1G121600.1	Barley	nucleus	49.34	61.08
GSMUA_Achr2P18410_001	Banana	nucleus	10.92	60.98
HORVU6Hr1G003730.1	Barley	nucleus	19.65	52.94
HORVU6Hr1G085570.1	Barley	mitochondrion, nucleus	53.28	46.92
HORVU2Hr1G022060.1	Barley	nucleus, plastid	40.17	44.88
EES06917	Sorghum	mitochondrion, nucleus	41.48	36.68
Zm00001d013792_P001	Maize	mitochondrion, nucleus	42.79	35.25
Zm00001d016791_P001	Maize	mitochondrion	43.67	34.84
KRG88863	Soybean	mitochondrion, nucleus	20.96	34.29
PGSC0003DMT400086956	Potato	nucleus	20.52	31.97
AT1G22590.2	Thale cress	mitochondrion, nucleus	22.71	31.9
KXG38099	Sorghum	plastid	43.67	31.75
GSMUA_Achr3P08500_001	Banana	nucleus	31.88	31.74
KRG89836	Soybean	nucleus	20.52	31.54
GSMUA_AchrUn_...	Banana	nucleus	31.88	31.33
GSMUA_Achr3P24560_001	Banana	nucleus	31.44	31.03
GSMUA_Achr2P18400_001	Banana	nucleus	31.0	30.6
EER91288	Sorghum	mitochondrion, nucleus	41.48	30.25
PGSC0003DMT400089787	Potato	cytosol	22.27	29.31
Bra024521.1-P	Field mustard	mitochondrion	20.52	29.01
CDY04801	Canola	mitochondrion, nucleus	20.52	29.01
CDY21372	Canola	mitochondrion	20.52	29.01
Bra012335.1-P	Field mustard	mitochondrion	20.09	28.4
CDY25744	Canola	mitochondrion	20.09	28.4
VIT_14s0060g00300.t01	Wine grape	nucleus	29.26	28.39
KRH33740	Soybean	nucleus	19.65	28.3
KRH30113	Soybean	nucleus	20.96	28.07
CDY33537	Canola	nucleus	24.02	28.06
HORVU6Hr1G085670.1	Barley	nucleus	40.61	28.01
Bra005166.1-P	Field mustard	mitochondrion, nucleus	15.28	28.0
KRH72060	Soybean	nucleus	20.52	27.49
AT5G26630.1	Thale cress	nucleus	25.76	27.06
CDX80580	Canola	nucleus	23.58	26.73
CDY71896	Canola	nucleus	19.21	25.58
KRG97962	Soybean	nucleus	26.64	25.52
KRH30472	Soybean	nucleus	23.58	25.47
CDY64992	Canola	mitochondrion, nucleus	17.03	25.32
AT5G27810.1	Thale cress	cytosol, nucleus, plastid	13.1	25.21
KRG98150	Soybean	mitochondrion, nucleus	18.34	25.15
CDX88234	Canola	nucleus	20.09	25.14
Bra009913.1-P	Field mustard	nucleus	22.27	25.12
Solyc01g102260.2.1	Tomato	nucleus	27.07	24.9
GSMUA_Achr8P06150_001	Banana	nucleus	26.64	24.9
KRH30919	Soybean	nucleus	26.2	24.79
KRG98152	Soybean	nucleus	20.52	24.74
KRH30476	Soybean	nucleus	16.16	24.67
PGSC0003DMT400003073	Potato	cytosol	11.35	24.07
KRH66114	Soybean	nucleus	20.52	23.74
Bra020555.1-P	Field mustard	nucleus	21.83	23.15
CDY05540	Canola	nucleus	21.83	23.15
CDY25000	Canola	nucleus	21.83	23.15
KRH30473	Soybean	mitochondrion, nucleus	22.27	23.08
KRG98149	Soybean	nucleus	21.4	23.0
KRH30119	Soybean	cytosol	16.16	22.98
KRG98148	Soybean	nucleus	22.27	22.27
KRH66052	Soybean	mitochondrion, nucleus	21.83	22.22
KRG98143	Soybean	nucleus	20.09	21.8
KRG98142	Soybean	nucleus	24.89	21.35
PGSC0003DMT400095062	Potato	nucleus	26.2	21.28
KRG88915	Soybean	mitochondrion, nucleus	19.21	21.26
AT3G05860.1	Thale cress	nucleus	23.58	20.77
KRG98147	Soybean	mitochondrion, nucleus	23.14	20.62
AT5G35120.1	Thale cress	cytosol	9.61	20.56
PGSC0003DMT400090586	Potato	nucleus	20.96	20.43
Bra018490.1-P	Field mustard	nucleus	25.33	20.0
CDX97329	Canola	nucleus	25.33	20.0
KRH72066	Soybean	mitochondrion, nucleus	17.9	19.9
AT1G65300.1	Thale cress	nucleus	24.02	19.78
PGSC0003DMT400088489	Potato	nucleus	18.34	19.72
PGSC0003DMT400089454	Potato	nucleus	20.96	19.59
Bra029469.1-P	Field mustard	nucleus	25.76	19.41
CDY60402	Canola	nucleus	25.76	19.41
AT1G65330.1	Thale cress	nucleus	23.58	19.35
CDY27735	Canola	nucleus	22.27	19.1
PGSC0003DMT400088654	Potato	nucleus	27.07	18.96
AT5G48670.1	Thale cress	nucleus	26.2	18.69
PGSC0003DMT400091650	Potato	nucleus	20.96	18.53
PGSC0003DMT400090953	Potato	nucleus	27.07	18.45
PGSC0003DMT400073719	Potato	nucleus	20.52	18.01
PGSC0003DMT400095755	Potato	nucleus	26.2	17.44
AT1G59930.1	Thale cress	cytosol	10.04	17.42
Bra039404.1-P	Field mustard	nucleus	22.71	17.22
PGSC0003DMT400090516	Potato	nucleus	13.1	16.95
CDY38696	Canola	nucleus	20.52	16.91
KRH30471	Soybean	nucleus	22.27	16.83
PGSC0003DMT400061726	Potato	nucleus	24.02	16.82
KRG88862	Soybean	nucleus	22.27	16.29
Bra035448.1-P	Field mustard	nucleus	18.78	16.29
CDY05207	Canola	nucleus	23.58	16.17
PGSC0003DMT400087890	Potato	cytosol	7.86	16.07
PGSC0003DMT400095426	Potato	mitochondrion	24.45	16.05
KRG88914	Soybean	cytosol	15.28	15.98
AT5G27960.1	Thale cress	nucleus	22.27	15.94
CDY71564	Canola	nucleus	23.58	15.93
Bra035449.1-P	Field mustard	nucleus	18.34	15.91
CDY27734	Canola	nucleus	23.14	15.77
PGSC0003DMT400077258	Potato	nucleus	26.64	15.64
Bra041022.1-P	Field mustard	nucleus	22.71	15.57
CDX80577	Canola	mitochondrion, nucleus	20.09	15.28
Bra020552.1-P	Field mustard	nucleus	22.71	15.25
CDX88231	Canola	nucleus	18.34	15.22
KRG98146	Soybean	nucleus	21.4	14.94
AT2G28700.1	Thale cress	nucleus	21.4	14.89
CDY18830	Canola	nucleus	22.27	14.83
AT5G26650.1	Thale cress	nucleus	23.58	14.75
CDY70782	Canola	nucleus	20.52	14.55
AT5G26580.1	Thale cress	nucleus	21.83	14.49
AT1G31630.1	Thale cress	mitochondrion	21.4	14.45
PGSC0003DMT400061724	Potato	mitochondrion, nucleus	24.02	14.36
PGSC0003DMT400085256	Potato	nucleus	23.58	14.29
PGSC0003DMT400095417	Potato	cytosol	7.86	14.06
PGSC0003DMT400088008	Potato	nucleus	11.35	13.47
Bra009911.1-P	Field mustard	mitochondrion, nucleus	21.4	13.46
CDY05333	Canola	nucleus	21.4	13.0
CDY05515	Canola	nucleus	20.96	12.73
CDY67043	Canola	nucleus	21.4	12.53
Bra020550.1-P	Field mustard	nucleus	20.52	12.37
Bra040248.1-P	Field mustard	nucleus	22.27	12.35
Bra020525.1-P	Field mustard	nucleus	20.96	12.15
PGSC0003DMT400085623	Potato	nucleus	10.48	12.0
PGSC0003DMT400086919	Potato	nucleus	12.23	11.38
Bra020524.1-P	Field mustard	nucleus	17.03	10.83
CDY05514	Canola	nucleus	17.03	10.83
AT1G31640.1	Thale cress	mitochondrion	21.83	10.78
PGSC0003DMT400086447	Potato	cytosol	8.73	10.42
PGSC0003DMT400094113	Potato	cytosol	7.86	10.4
PGSC0003DMT400094378	Potato	nucleus	6.99	10.26
CDY05205	Canola	cytosol, mitochondrion, nucleus	6.11	8.59
Solyc07g043080.1.1	Tomato	cytosol	4.37	8.06
PGSC0003DMT400085114	Potato	cytosol, endoplasmic reticulum, nucleus	9.17	7.45
PGSC0003DMT400089615	Potato	cytosol	5.24	5.04
PGSC0003DMT400061722	Potato	plastid	1.31	2.88
PGSC0003DMT400091747	Potato	plastid	1.75	2.63
PGSC0003DMT400097522	Potato	cytosol, extracellular, mitochondrion, nucleus	1.31	2.56
PGSC0003DMT400065010	Potato	vacuole	2.18	2.5
PGSC0003DMT400085093	Potato	extracellular, plastid, vacuole	2.18	2.49

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A287V1A8	ncoils:Coil	GO:GO:0000982	GO:GO:0000987
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	EnsemblPlantsGene:HORVU6Hr1G085540	EnsemblPlants:HORVU6Hr1G085540.1	InterPro:IPR002100	InterPro:IPR036879	InterPro:MADS_SRF-like
PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF153	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000B48799C	:	:

Description

No Description!

Coordinates

chrchr6H:+:559228665..559229610

Molecular Weight (calculated)

25199.6 Da

IEP (calculated)

9.500

GRAVY (calculated)

-0.462

Length

229 amino acids

Sequence
(BLAST)

001: MARKKATRKK VTLNYIHNNS TRRASFRKRL KGLMKKAAEL ATMCGVKTCV VVYGKGEAEP KVFPSHDKAV DILNEYKSMP DLGHCKKTMD QEAFLTKRIA
101: KLHDKVNKAR CECQDSEIRY LLYNIMHGNH PGLVDLSVEE LARVGWKVEE LLKSLGERMA KIQVQAPPPA PCISTGSIDM GSPSHYLASP QHQDGYLNMV
201: SSGGDVGTQV YGGNASHDGA GFSGGDMMM

Best Arabidopsis Sequence Match ( AT5G48670.1 )
(BLAST)

001: MTRKKVKLAY ISNDSSRKAT FKKRKKGLMK KVHELSTLCG ITACAIIYSP YDTNPEVWPS NSGVQRVVSE FRTLPEMDQH KKMVDQEGFL KQRIAKATET
101: LRRQRKDSRE LEMTEVMFQC LIGNMEMFHL NIVDLNDLGY MIEQYLKDVN RRIEILRNSG TEIGESSSVA VAASEGNIPM PNLVATTAPT TTIYEVGSSS
201: SFAAVANFVN PIDLQQFRHP AAQHVGLNEQ PQNLNLNLNQ NYNQNQEWFM EMMNHPEQMR YQTEQMGYQF MDDNHHNHIH HQPQEHQHQI HDESSNALDA
301: ANSSSIIPVT SSSITNKTWF H

Arabidopsis Description

AGL80Agamous-like MADS-box protein AGL80 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJK3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.