Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05515 | Canola | nucleus | 91.78 | 91.78 |
| CDY05514 | Canola | nucleus | 74.8 | 78.33 |
| CDY71896 | Canola | nucleus | 32.1 | 70.35 |
| CDY71564 | Canola | nucleus | 58.09 | 64.6 |
| CDY67043 | Canola | nucleus | 66.31 | 63.94 |
| CDY70782 | Canola | nucleus | 53.05 | 61.92 |
| GSMUA_Achr2P18410_001 | Banana | nucleus | 5.84 | 53.66 |
| CDX88231 | Canola | nucleus | 33.16 | 45.29 |
| CDX80577 | Canola | mitochondrion, nucleus | 35.81 | 44.85 |
| AT5G27960.1 | Thale cress | nucleus | 29.18 | 34.38 |
| AT5G26650.1 | Thale cress | nucleus | 32.1 | 33.06 |
| CDY25000 | Canola | nucleus | 18.57 | 32.41 |
| AT1G65330.1 | Thale cress | nucleus | 23.61 | 31.9 |
| AT5G26580.1 | Thale cress | nucleus | 29.18 | 31.88 |
| CDY05540 | Canola | nucleus | 18.04 | 31.48 |
| AT1G65300.1 | Thale cress | nucleus | 23.08 | 31.3 |
| CDY64992 | Canola | mitochondrion, nucleus | 12.73 | 31.17 |
| AT1G31630.1 | Thale cress | mitochondrion | 27.85 | 30.97 |
| CDX88234 | Canola | nucleus | 14.85 | 30.6 |
| CDY33537 | Canola | nucleus | 15.38 | 29.59 |
| CDX80580 | Canola | nucleus | 15.38 | 28.71 |
| OQU83806 | Sorghum | nucleus | 12.73 | 27.43 |
| HORVU6Hr1G003730.1 | Barley | nucleus | 6.1 | 27.06 |
| KXG28892 | Sorghum | nucleus | 13.26 | 27.03 |
| TraesCS3D01G138400.1 | Wheat | cytosol | 13.53 | 26.84 |
| KXG28893 | Sorghum | nucleus | 11.94 | 26.79 |
| GSMUA_Achr3P05500_001 | Banana | nucleus | 15.38 | 26.24 |
| AT5G35120.1 | Thale cress | cytosol | 7.43 | 26.17 |
| TraesCS3B01G155200.1 | Wheat | cytosol | 13.53 | 26.15 |
| GSMUA_AchrUn_... | Banana | nucleus | 15.65 | 25.32 |
| EES10067 | Sorghum | mitochondrion | 13.79 | 25.24 |
| GSMUA_Achr3P08500_001 | Banana | nucleus | 15.38 | 25.22 |
| CDY05207 | Canola | nucleus | 22.28 | 25.15 |
| TraesCS6A01G020500.1 | Wheat | mitochondrion, nucleus | 10.34 | 25.0 |
| HORVU7Hr1G121600.1 | Barley | nucleus | 12.2 | 24.86 |
| CDY27735 | Canola | nucleus | 17.51 | 24.72 |
| TraesCS3A01G137500.1 | Wheat | cytosol | 13.0 | 24.62 |
| AT1G31640.1 | Thale cress | mitochondrion | 29.97 | 24.35 |
| GSMUA_Achr3P24560_001 | Banana | nucleus | 14.85 | 24.14 |
| CDX97329 | Canola | nucleus | 18.3 | 23.79 |
| TraesCS7B01G484600.1 | Wheat | nucleus | 10.34 | 23.78 |
| GSMUA_Achr2P18400_001 | Banana | nucleus | 14.59 | 23.71 |
| CDY60402 | Canola | nucleus | 19.1 | 23.68 |
| AT1G59930.1 | Thale cress | cytosol | 8.22 | 23.48 |
| CDY25744 | Canola | mitochondrion | 10.08 | 23.46 |
| TraesCS7D01G548500.1 | Wheat | plastid | 14.59 | 23.4 |
| TraesCS6D01G024000.1 | Wheat | mitochondrion, nucleus | 11.41 | 23.37 |
| GSMUA_Achr8P06150_001 | Banana | nucleus | 15.12 | 23.27 |
| CDY27734 | Canola | nucleus | 20.69 | 23.21 |
| TraesCS7A01G561000.1 | Wheat | nucleus | 14.32 | 23.08 |
| TraesCS7B01G485400.1 | Wheat | nucleus | 14.32 | 23.08 |
| TraesCS6B01G028100.1 | Wheat | mitochondrion | 11.41 | 22.87 |
| KXG28889 | Sorghum | nucleus | 15.12 | 22.8 |
| KXG32310 | Sorghum | nucleus | 14.59 | 22.73 |
| Zm00001d048894_P001 | Maize | mitochondrion | 14.85 | 22.67 |
| EES06917 | Sorghum | mitochondrion, nucleus | 15.38 | 22.39 |
| PGSC0003DMT400003073 | Potato | cytosol | 6.37 | 22.22 |
| TraesCS7D01G550500.1 | Wheat | nucleus | 10.88 | 22.16 |
| Os03t0582400-01 | Rice | nucleus | 14.59 | 22.09 |
| TraesCS6B01G027900.1 | Wheat | nucleus | 13.26 | 22.03 |
| TraesCS6D01G024300.1 | Wheat | mitochondrion | 13.26 | 22.03 |
| TraesCS7A01G559500.1 | Wheat | nucleus | 11.14 | 21.99 |
| TraesCS3B01G159600.1 | Wheat | nucleus | 14.59 | 21.91 |
| TraesCS6A01G020900.1 | Wheat | mitochondrion | 12.2 | 21.8 |
| TraesCS6D01G023800.1 | Wheat | mitochondrion | 13.0 | 21.59 |
| TraesCS3A01G312600.1 | Wheat | nucleus | 14.32 | 21.51 |
| HORVU6Hr1G085540.1 | Barley | mitochondrion | 13.0 | 21.4 |
| TraesCS6B01G028300.1 | Wheat | mitochondrion | 11.94 | 21.33 |
| CDY38696 | Canola | nucleus | 15.65 | 21.22 |
| TraesCS6A01G022700.1 | Wheat | mitochondrion | 12.73 | 21.15 |
| HORVU2Hr1G022060.1 | Barley | nucleus, plastid | 11.41 | 20.98 |
| Zm00001d013792_P001 | Maize | mitochondrion, nucleus | 15.38 | 20.86 |
| OQU83804 | Sorghum | mitochondrion | 13.0 | 20.85 |
| TraesCS7B01G484000.1 | Wheat | nucleus | 10.08 | 20.54 |
| TraesCS6B01G391600.1 | Wheat | nucleus | 13.26 | 20.41 |
| TraesCS6B01G391700.1 | Wheat | nucleus | 13.26 | 20.41 |
| KXG28890 | Sorghum | mitochondrion | 13.79 | 20.39 |
| CDY04801 | Canola | mitochondrion, nucleus | 8.75 | 20.37 |
| TraesCS6D01G341700.1 | Wheat | nucleus | 13.0 | 20.33 |
| TraesCS6D01G342000.1 | Wheat | nucleus | 13.0 | 20.33 |
| TraesCS6A01G359100.1 | Wheat | mitochondrion | 14.06 | 20.31 |
| KXG28888 | Sorghum | nucleus | 13.53 | 20.0 |
| TraesCS6B01G391800.1 | Wheat | mitochondrion | 13.79 | 19.92 |
| TraesCS6D01G342100.1 | Wheat | mitochondrion | 13.79 | 19.92 |
| TraesCS6A01G358900.1 | Wheat | nucleus | 12.47 | 19.92 |
| Zm00001d016791_P001 | Maize | mitochondrion | 15.12 | 19.86 |
| CDY21372 | Canola | mitochondrion | 8.49 | 19.75 |
| TraesCS2B01G171700.1 | Wheat | mitochondrion | 9.81 | 19.37 |
| HORVU6Hr1G085570.1 | Barley | mitochondrion, nucleus | 13.0 | 18.85 |
| CDY18830 | Canola | nucleus | 16.98 | 18.6 |
| TraesCS6D01G341800.1 | Wheat | mitochondrion, nucleus | 12.2 | 18.55 |
| TraesCS7D01G550600.1 | Wheat | nucleus | 11.67 | 18.26 |
| TraesCS7D01G551000.1 | Wheat | nucleus | 11.41 | 18.22 |
| TraesCS6A01G359700.1 | Wheat | nucleus | 10.88 | 18.06 |
| TraesCS7B01G484500.1 | Wheat | nucleus | 11.41 | 17.84 |
| KXG38099 | Sorghum | plastid | 14.85 | 17.78 |
| TraesCS7B01G484100.1 | Wheat | mitochondrion, nucleus | 10.88 | 17.01 |
| EER91288 | Sorghum | mitochondrion, nucleus | 13.79 | 16.56 |
| TraesCS2D01G128000.1 | Wheat | nucleus | 9.28 | 16.51 |
| CDY05205 | Canola | cytosol, mitochondrion, nucleus | 6.9 | 15.95 |
| TraesCS7A01G551000.1 | Wheat | nucleus | 13.0 | 15.65 |
| TraesCS7D01G536700.1 | Wheat | nucleus | 12.73 | 15.34 |
| TraesCS2D01G150900.1 | Wheat | mitochondrion | 12.2 | 14.98 |
| TraesCS7A01G398800.1 | Wheat | nucleus | 12.2 | 14.29 |
| TraesCS6D01G342700.1 | Wheat | nucleus | 11.67 | 14.24 |
| TraesCS7B01G299400.1 | Wheat | nucleus | 11.67 | 13.62 |
| TraesCS6B01G392600.1 | Wheat | nucleus | 11.14 | 13.55 |
| TraesCS7D01G393000.1 | Wheat | nucleus | 11.41 | 13.31 |
| TraesCS2A01G146400.1 | Wheat | mitochondrion | 12.47 | 13.2 |
| TraesCS2B01G146100.1 | Wheat | nucleus | 12.47 | 12.95 |
| HORVU6Hr1G085670.1 | Barley | nucleus | 9.81 | 11.14 |
| PGSC0003DMT400089615 | Potato | cytosol | 5.31 | 8.4 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078F0D3 | EnsemblPlants:CDY05333 | ProteinID:CDY05333 | ProteinID:CDY05333.1 |
| GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00120181001 | InterPro:IPR002100 | InterPro:IPR036879 |
| InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF355 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE8765 | SEG:seg |
Description
BnaC02g40410D
Coordinates
chrLK031961:+:257258..258445
Molecular Weight (calculated)
42476.2 Da
IEP (calculated)
6.516
GRAVY (calculated)
-0.710
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRGRLKLNF INNKSIRNQT FKKRKRGFMK KAKELSTLCG VKVSAVIKSC DNAETEFWPS KEGAEAVHSE FMKVVETQGF SKMHNHESYL LERIQKDGEK
101: ARRLHAENRE IELREVMFDL LKGKTLMPHQ YGDPSFMREL NLFIGGYANR VTYRTQFLEG SVEPVPPNVA GANAPGPVVG DVNPVVVGTE GSVIDPTEAY
201: DNMPQYDGMD MSLNTLPWFN GSSQGMNVNH QESFQYQTPP NSYDQIQPMF NGSSQGMNMK YEEPFLYQPP GNLYDQMQPM FYGSSQDMYT CLGHDQGQSS
301: NQYPNAKQQF MSLLMGRPQQ MSDVQDLASV ASMDDNNNRY QQLPVTSQMP STTTTTAAVN PSGHSINNGC PTRFGLD
101: ARRLHAENRE IELREVMFDL LKGKTLMPHQ YGDPSFMREL NLFIGGYANR VTYRTQFLEG SVEPVPPNVA GANAPGPVVG DVNPVVVGTE GSVIDPTEAY
201: DNMPQYDGMD MSLNTLPWFN GSSQGMNVNH QESFQYQTPP NSYDQIQPMF NGSSQGMNMK YEEPFLYQPP GNLYDQMQPM FYGSSQDMYT CLGHDQGQSS
301: NQYPNAKQQF MSLLMGRPQQ MSDVQDLASV ASMDDNNNRY QQLPVTSQMP STTTTTAAVN PSGHSINNGC PTRFGLD
001: MRGKMKLSFI ENDSVRKTTF TKRKKGMLKK FNELVTLCGV DACAVIRSPY NSIQEPWPSR EGVEEVMSKF MEFSVLDRTK KMVDQETFLR QRIAKETERL
101: QKLRDENRNS QIRDLMFGCL KGEVDVSHLH GRDLLDLNVF LNKYLNGVIR RVEILKENGE SSSSVPPPIG VAPTVVDASV PIGFDGRMIQ DQNQNQQEPV
201: QFQYQALYDF YDQIPKKLHD FNMKMNIDPN QSMNLDLNDG EDEGIPCMDN NNYHPEIDCL ATVTTAPTDV CAPNIINDL
101: QKLRDENRNS QIRDLMFGCL KGEVDVSHLH GRDLLDLNVF LNKYLNGVIR RVEILKENGE SSSSVPPPIG VAPTVVDASV PIGFDGRMIQ DQNQNQQEPV
201: QFQYQALYDF YDQIPKKLHD FNMKMNIDPN QSMNLDLNDG EDEGIPCMDN NNYHPEIDCL ATVTTAPTDV CAPNIINDL
Arabidopsis Description
PHE1MADS-box transcription factor PHERES 1 [Source:UniProtKB/Swiss-Prot;Acc:O80805]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.