Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 1
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45604 | Canola | cytosol | 93.1 | 93.1 |
| CDY34751 | Canola | cytosol | 58.62 | 30.09 |
| Bra032057.1-P | Field mustard | nucleus | 91.38 | 29.44 |
| CDX76788 | Canola | cytosol | 56.9 | 29.2 |
| Bra007829.1-P | Field mustard | nucleus | 58.62 | 16.43 |
| AT2G24840.1 | Thale cress | nucleus | 56.9 | 12.5 |
| CDY55987 | Canola | nucleus | 32.76 | 11.31 |
| CDX81713 | Canola | nucleus | 31.03 | 11.11 |
| CDY51695 | Canola | cytosol | 32.76 | 9.69 |
| VIT_03s0088g00590.t01 | Wine grape | nucleus | 27.59 | 7.48 |
| PGSC0003DMT400094062 | Potato | nucleus | 24.14 | 6.86 |
| KRH35626 | Soybean | nucleus | 25.86 | 6.64 |
| KRG91150 | Soybean | nucleus | 25.86 | 6.64 |
| CDY24623 | Canola | nucleus | 31.03 | 6.36 |
| PGSC0003DMT400094816 | Potato | golgi, nucleus, plastid | 24.14 | 6.33 |
| CDX95426 | Canola | nucleus | 29.31 | 6.16 |
| CDY42198 | Canola | nucleus | 29.31 | 6.16 |
| CDY46165 | Canola | nucleus | 29.31 | 6.01 |
| CDY31718 | Canola | nucleus | 24.14 | 5.86 |
| CDY31547 | Canola | nucleus | 27.59 | 5.73 |
| VIT_03s0088g00610.t01 | Wine grape | cytosol | 20.69 | 5.48 |
| CDY04574 | Canola | nucleus | 22.41 | 5.46 |
| CDY61930 | Canola | nucleus | 25.86 | 5.38 |
| CDY21751 | Canola | nucleus | 17.24 | 4.85 |
| CDX81816 | Canola | nucleus | 17.24 | 4.85 |
| CDX99867 | Canola | nucleus | 15.52 | 4.64 |
| CDY15761 | Canola | nucleus | 17.24 | 4.48 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 25.86 | 4.32 |
| CDY09205 | Canola | nucleus | 20.69 | 4.27 |
| CDX72908 | Canola | nucleus | 15.52 | 4.23 |
| CDY09199 | Canola | nucleus | 17.24 | 4.03 |
| CDY26304 | Canola | nucleus | 12.07 | 3.78 |
| CDY50644 | Canola | cytosol, mitochondrion, nucleus | 13.79 | 3.77 |
| CDX68270 | Canola | cytosol, nucleus, plastid | 13.79 | 3.77 |
| CDY28567 | Canola | mitochondrion, nucleus | 15.52 | 3.63 |
| CDY09204 | Canola | nucleus | 15.52 | 3.61 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 13.79 | 3.28 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 12.07 | 2.85 |
| CDX74094 | Canola | nucleus | 6.9 | 2.23 |
| CDY57614 | Canola | nucleus | 6.9 | 2.23 |
| CDY71457 | Canola | nucleus | 1.72 | 0.81 |
| CDY69485 | Canola | nucleus | 1.72 | 0.81 |
| Solyc04g025970.1.1 | Tomato | cytosol, nucleus, peroxisome | 0.0 | 0.0 |
| CDY36151 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY36150 | EnsemblPlantsGene:GSBRNA2T00059999001 | ProteinID:CDY36150 | ProteinID:CDY36150.1 | UniParc:UPI0004EEBF3C | UniProt:A0A078HCL6 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC04g37440DBnaC04g37440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCL6]
Coordinates
chrLK032368:-:26140..26316
Molecular Weight (calculated)
7012.6 Da
IEP (calculated)
9.521
GRAVY (calculated)
-0.493
Length
58 amino acids
Sequence
(BLAST)
(BLAST)
1: MAEMRRANAV RWSMTNWWER PVEEMNMIQL REMKSALEEL WKIVVSETST ARQLGLRM
001: MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF
Arabidopsis Description
AGL61Agamous-like MADS-box protein AGL61 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.