Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34751 | Canola | cytosol | 94.69 | 94.69 |
| CDY45604 | Canola | cytosol | 30.97 | 60.34 |
| CDY36150 | Canola | cytosol | 29.2 | 56.9 |
| Bra007829.1-P | Field mustard | nucleus | 94.69 | 51.69 |
| AT2G24840.1 | Thale cress | nucleus | 62.83 | 26.89 |
| Bra032057.1-P | Field mustard | nucleus | 42.48 | 26.67 |
| CDX81713 | Canola | nucleus | 26.55 | 18.52 |
| CDY55987 | Canola | nucleus | 26.55 | 17.86 |
| PGSC0003DMT400094062 | Potato | nucleus | 28.32 | 15.69 |
| CDY51695 | Canola | cytosol | 26.55 | 15.31 |
| KRG91150 | Soybean | nucleus | 29.2 | 14.6 |
| PGSC0003DMT400094816 | Potato | golgi, nucleus, plastid | 27.43 | 14.03 |
| VIT_03s0088g00590.t01 | Wine grape | nucleus | 25.66 | 13.55 |
| KRH35626 | Soybean | nucleus | 26.55 | 13.27 |
| VIT_03s0088g00610.t01 | Wine grape | cytosol | 22.12 | 11.42 |
| CDY42198 | Canola | nucleus | 26.55 | 10.87 |
| CDY24623 | Canola | nucleus | 26.55 | 10.6 |
| CDY46165 | Canola | nucleus | 26.55 | 10.6 |
| CDX95426 | Canola | nucleus | 25.66 | 10.51 |
| CDY15761 | Canola | nucleus | 19.47 | 9.87 |
| CDY04574 | Canola | nucleus | 20.35 | 9.66 |
| CDY31718 | Canola | nucleus | 20.35 | 9.62 |
| CDY31547 | Canola | nucleus | 20.35 | 8.24 |
| CDY61930 | Canola | nucleus | 20.35 | 8.24 |
| CDY09199 | Canola | nucleus | 17.7 | 8.06 |
| CDY28567 | Canola | mitochondrion, nucleus | 17.7 | 8.06 |
| CDY09204 | Canola | nucleus | 17.7 | 8.03 |
| CDY09205 | Canola | nucleus | 19.47 | 7.83 |
| CDX99867 | Canola | nucleus | 10.62 | 6.19 |
| CDX72908 | Canola | nucleus | 11.5 | 6.1 |
| CDX81816 | Canola | nucleus | 10.62 | 5.83 |
| CDY26304 | Canola | nucleus | 8.85 | 5.41 |
| CDY21751 | Canola | nucleus | 9.73 | 5.34 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 11.5 | 5.33 |
| CDX74094 | Canola | nucleus | 7.96 | 5.03 |
| CDY57614 | Canola | nucleus | 7.96 | 5.03 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 13.27 | 4.32 |
| CDY50644 | Canola | cytosol, mitochondrion, nucleus | 7.96 | 4.25 |
| CDX68270 | Canola | cytosol, nucleus, plastid | 7.96 | 4.25 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 8.85 | 4.07 |
| CDY71457 | Canola | nucleus | 3.54 | 3.23 |
| CDY69485 | Canola | nucleus | 3.54 | 3.23 |
| Solyc04g025970.1.1 | Tomato | cytosol, nucleus, peroxisome | 2.65 | 2.56 |
| CDY36151 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX76788 | EnsemblPlantsGene:GSBRNA2T00127286001 | ProteinID:CDX76788 | ProteinID:CDX76788.1 | UniParc:UPI0004EDE524 | MapMan:35.1 |
Description
BnaC08g33740D
Coordinates
chrLK031808:-:1105663..1106004
Molecular Weight (calculated)
12683.2 Da
IEP (calculated)
5.909
GRAVY (calculated)
-0.358
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLTQTVSEV EEEKKKGQAM ADVRKGNAAR RLVTNWWEGP VDEMNVVQLK VMKCALEELR KIVVSETNTV PFKEVKEDVF GFLDTNKVTA PSYMNTSSGL
101: SNAYHFGYGN GCF
101: SNAYHFGYGN GCF
001: MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF
Arabidopsis Description
AGL61Agamous-like MADS-box protein AGL61 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.