Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035685.1-P | Field mustard | nucleus | 84.94 | 69.28 |
| CDY15761 | Canola | nucleus | 54.39 | 58.3 |
| CDY04574 | Canola | nucleus | 56.9 | 57.14 |
| Solyc04g025050.1.1 | Tomato | golgi, mitochondrion, nucleus, plastid | 12.97 | 55.36 |
| VIT_01s0010g01500.t01 | Wine grape | nucleus | 20.08 | 46.6 |
| CDY36151 | Canola | nucleus | 17.15 | 46.59 |
| KRH22644 | Soybean | nucleus | 23.43 | 40.29 |
| CDY69485 | Canola | nucleus | 20.5 | 39.52 |
| CDY71457 | Canola | nucleus | 20.5 | 39.52 |
| PGSC0003DMT400013136 | Potato | nucleus | 30.96 | 37.56 |
| CDX81713 | Canola | nucleus | 24.69 | 36.42 |
| VIT_03s0088g00550.t01 | Wine grape | nucleus | 32.22 | 36.15 |
| AT4G36590.1 | Thale cress | nucleus | 37.24 | 35.89 |
| CDY55987 | Canola | nucleus | 25.1 | 35.71 |
| VIT_03s0088g00510.t01 | Wine grape | nucleus | 33.05 | 35.27 |
| VIT_03s0088g00600.t01 | Wine grape | nucleus | 31.38 | 35.05 |
| KRH32912 | Soybean | nucleus | 25.1 | 34.68 |
| KRH32901 | Soybean | nucleus | 24.69 | 34.1 |
| KRH32910 | Soybean | nucleus | 25.1 | 33.71 |
| KRH32917 | Soybean | nucleus | 25.1 | 33.71 |
| KRH32909 | Soybean | nucleus | 24.27 | 33.53 |
| KRG88448 | Soybean | nucleus | 24.27 | 33.53 |
| KRH32915 | Soybean | nucleus | 23.85 | 32.95 |
| KRH32904 | Soybean | nucleus | 23.85 | 32.95 |
| KRH32916 | Soybean | nucleus | 23.85 | 32.95 |
| KRH32946 | Soybean | nucleus | 23.85 | 32.95 |
| KRH32900 | Soybean | nucleus | 23.43 | 32.37 |
| CDY31547 | Canola | nucleus | 36.4 | 31.18 |
| CDY61930 | Canola | nucleus | 36.4 | 31.18 |
| KRH33030 | Soybean | nucleus | 14.64 | 30.97 |
| KRG91148 | Soybean | nucleus | 30.96 | 30.58 |
| AT1G65360.1 | Thale cress | nucleus | 28.87 | 30.53 |
| CDY46165 | Canola | nucleus | 35.98 | 30.39 |
| CDY42198 | Canola | nucleus | 34.73 | 30.07 |
| CDY24623 | Canola | nucleus | 35.56 | 30.04 |
| KRG91147 | Soybean | nucleus | 29.71 | 29.71 |
| KRH35628 | Soybean | nucleus | 30.13 | 29.15 |
| KRH72042 | Soybean | extracellular | 12.55 | 29.13 |
| CDX95426 | Canola | nucleus | 33.47 | 28.99 |
| KRH72149 | Soybean | mitochondrion | 20.08 | 28.4 |
| CDY09199 | Canola | nucleus | 29.29 | 28.23 |
| KRG91149 | Soybean | mitochondrion | 28.03 | 27.69 |
| KRH32873 | Soybean | nucleus | 25.1 | 27.65 |
| CDY09204 | Canola | nucleus | 28.45 | 27.31 |
| AT1G01530.1 | Thale cress | nucleus | 28.03 | 27.13 |
| KRH35627 | Soybean | mitochondrion | 28.03 | 27.13 |
| KRH71935 | Soybean | nucleus | 20.08 | 27.12 |
| CDY28567 | Canola | mitochondrion, nucleus | 28.03 | 27.02 |
| CDY09205 | Canola | nucleus | 31.38 | 26.69 |
| KRH28025 | Soybean | nucleus | 17.57 | 25.0 |
| CDY36150 | Canola | cytosol | 5.86 | 24.14 |
| CDY45604 | Canola | cytosol | 5.86 | 24.14 |
| CDY57614 | Canola | nucleus | 17.57 | 23.46 |
| CDX74094 | Canola | nucleus | 17.57 | 23.46 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 22.59 | 21.95 |
| CDX99867 | Canola | nucleus | 17.57 | 21.65 |
| KRH72146 | Soybean | nucleus | 17.15 | 21.58 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 21.76 | 21.31 |
| CDY26304 | Canola | nucleus | 16.32 | 21.08 |
| CDX81816 | Canola | nucleus | 17.57 | 20.39 |
| CDY21751 | Canola | nucleus | 17.57 | 20.39 |
| KRH35629 | Soybean | nucleus | 17.99 | 20.38 |
| CDY34751 | Canola | cytosol | 9.62 | 20.35 |
| CDX76788 | Canola | cytosol | 9.62 | 20.35 |
| CDX72908 | Canola | nucleus | 17.57 | 19.72 |
| KRH32908 | Soybean | nucleus | 7.11 | 18.89 |
| CDY50644 | Canola | cytosol, mitochondrion, nucleus | 16.32 | 18.4 |
| CDX68270 | Canola | cytosol, nucleus, plastid | 16.32 | 18.4 |
| CDY51695 | Canola | cytosol | 14.64 | 17.86 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 23.85 | 16.43 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078H4H1 | UniProt:A0A078H4H1 | EnsemblPlants:CDY31718 | ProteinID:CDY31718 |
| ProteinID:CDY31718.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00050349001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI0004EF244C | SEG:seg | : | : | : | : |
Description
BnaA04g16540DBnaA04g16540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H4H1]
Coordinates
chrLK032278:+:29445..30559
Molecular Weight (calculated)
27663.2 Da
IEP (calculated)
9.760
GRAVY (calculated)
-0.718
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MARSRKGRQK IQIVKMEKDS DLHVTYSKRR QGLFKKASEL CTLCGVEIGV LVFSPGRKVF SFGNPDVRYV FNRFKSYDQN PFQLNEFGPS ATIRGLNSIL
101: SQELVKLEKE QARRKILEKI RIQREETDKW WEKPPSELNL RQNTCLISVL ENLRMNLGSP RFQQAMVPQN YCGGSNNNIV GGGNTDPLDE RSMFENAFNY
201: NPNMMIPNQG PTLGYNNIKP EVFDPIYNMN WPEYKHGPY
101: SQELVKLEKE QARRKILEKI RIQREETDKW WEKPPSELNL RQNTCLISVL ENLRMNLGSP RFQQAMVPQN YCGGSNNNIV GGGNTDPLDE RSMFENAFNY
201: NPNMMIPNQG PTLGYNNIKP EVFDPIYNMN WPEYKHGPY
001: MVRSTKGRQK IEMKKMENES NLQVTFSKRR FGLFKKASEL CTLSGAEILL IVFSPGGKVF SFGHPSVQEL IHRFSNPNHN SAIVHHQNNN LQLVETRPDR
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS
Arabidopsis Description
MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O23222]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.