Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G05860.1 | CDY04574 | AT4G36590.1 | 15805477 |
| AT3G05860.1 | CDY15761 | AT4G36590.1 | 15805477 |
| AT3G05860.1 | CDY31718 | AT4G36590.1 | 15805477 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27735 | Canola | nucleus | 94.48 | 57.68 |
| Bra039404.1-P | Field mustard | nucleus | 93.86 | 50.66 |
| AT3G05860.1 | Thale cress | nucleus | 50.92 | 31.92 |
| CDY38696 | Canola | nucleus | 34.97 | 20.5 |
| CDY18830 | Canola | nucleus | 33.13 | 15.7 |
| CDY64992 | Canola | mitochondrion, nucleus | 12.27 | 12.99 |
| CDX88234 | Canola | nucleus | 14.11 | 12.57 |
| CDX80580 | Canola | nucleus | 14.11 | 11.39 |
| CDY33537 | Canola | nucleus | 12.27 | 10.2 |
| GSMUA_Achr8P06150_001 | Banana | nucleus | 15.34 | 10.2 |
| CDY60402 | Canola | nucleus | 19.02 | 10.2 |
| CDX97329 | Canola | nucleus | 17.18 | 9.66 |
| CDY05540 | Canola | nucleus | 12.27 | 9.26 |
| CDY25000 | Canola | nucleus | 12.27 | 9.26 |
| CDX88231 | Canola | nucleus | 15.34 | 9.06 |
| CDX80577 | Canola | mitochondrion, nucleus | 16.56 | 8.97 |
| GSMUA_Achr3P24560_001 | Banana | nucleus | 11.66 | 8.19 |
| CDY71896 | Canola | nucleus | 8.59 | 8.14 |
| CDY05207 | Canola | nucleus | 16.56 | 8.08 |
| CDY27734 | Canola | nucleus | 15.95 | 7.74 |
| CDY67043 | Canola | nucleus | 17.79 | 7.42 |
| CDY71564 | Canola | nucleus | 15.34 | 7.37 |
| TraesCS6B01G391600.1 | Wheat | nucleus | 11.04 | 7.35 |
| TraesCS6B01G391700.1 | Wheat | nucleus | 11.04 | 7.35 |
| GSMUA_Achr2P18400_001 | Banana | nucleus | 10.43 | 7.33 |
| Os03t0582400-01 | Rice | nucleus | 11.04 | 7.23 |
| CDY05515 | Canola | nucleus | 16.56 | 7.16 |
| TraesCS6D01G342000.1 | Wheat | nucleus | 10.43 | 7.05 |
| TraesCS6A01G022700.1 | Wheat | mitochondrion | 9.82 | 7.05 |
| HORVU7Hr1G121600.1 | Barley | nucleus | 7.98 | 7.03 |
| KXG32310 | Sorghum | nucleus | 10.43 | 7.02 |
| CDY05514 | Canola | nucleus | 15.34 | 6.94 |
| CDY05333 | Canola | nucleus | 15.95 | 6.9 |
| TraesCS3D01G138400.1 | Wheat | cytosol | 7.98 | 6.84 |
| GSMUA_Achr3P05500_001 | Banana | nucleus | 9.2 | 6.79 |
| TraesCS3B01G155200.1 | Wheat | cytosol | 7.98 | 6.67 |
| TraesCS6D01G341700.1 | Wheat | nucleus | 9.82 | 6.64 |
| TraesCS6A01G020900.1 | Wheat | mitochondrion | 8.59 | 6.64 |
| TraesCS6D01G024300.1 | Wheat | mitochondrion | 9.2 | 6.61 |
| EES06917 | Sorghum | mitochondrion, nucleus | 10.43 | 6.56 |
| TraesCS6D01G342100.1 | Wheat | mitochondrion | 10.43 | 6.51 |
| TraesCS7B01G484000.1 | Wheat | nucleus | 7.36 | 6.49 |
| PGSC0003DMT400003073 | Potato | cytosol | 4.29 | 6.48 |
| GSMUA_AchrUn_... | Banana | nucleus | 9.2 | 6.44 |
| TraesCS6A01G358900.1 | Wheat | nucleus | 9.2 | 6.36 |
| TraesCS7D01G551000.1 | Wheat | nucleus | 9.2 | 6.36 |
| TraesCS7B01G484100.1 | Wheat | mitochondrion, nucleus | 9.2 | 6.22 |
| TraesCS7B01G484500.1 | Wheat | nucleus | 9.2 | 6.22 |
| TraesCS6B01G027900.1 | Wheat | nucleus | 8.59 | 6.17 |
| TraesCS6B01G028300.1 | Wheat | mitochondrion | 7.98 | 6.16 |
| TraesCS6A01G359100.1 | Wheat | mitochondrion | 9.82 | 6.13 |
| Zm00001d013792_P001 | Maize | mitochondrion, nucleus | 10.43 | 6.12 |
| HORVU6Hr1G085540.1 | Barley | mitochondrion | 8.59 | 6.11 |
| TraesCS3A01G137500.1 | Wheat | cytosol | 7.36 | 6.03 |
| TraesCS7B01G485400.1 | Wheat | nucleus | 8.59 | 5.98 |
| TraesCS3A01G312600.1 | Wheat | nucleus | 9.2 | 5.98 |
| CDY70782 | Canola | nucleus | 11.66 | 5.88 |
| HORVU2Hr1G022060.1 | Barley | nucleus, plastid | 7.36 | 5.85 |
| TraesCS7D01G550600.1 | Wheat | nucleus | 8.59 | 5.81 |
| TraesCS6B01G391800.1 | Wheat | mitochondrion | 9.2 | 5.75 |
| TraesCS6D01G023800.1 | Wheat | mitochondrion | 7.98 | 5.73 |
| TraesCS6D01G341800.1 | Wheat | mitochondrion, nucleus | 8.59 | 5.65 |
| TraesCS7D01G548500.1 | Wheat | plastid | 7.98 | 5.53 |
| KXG28888 | Sorghum | nucleus | 8.59 | 5.49 |
| KXG28890 | Sorghum | mitochondrion | 8.59 | 5.49 |
| TraesCS7D01G550500.1 | Wheat | nucleus | 6.13 | 5.41 |
| HORVU6Hr1G085570.1 | Barley | mitochondrion, nucleus | 8.59 | 5.38 |
| KXG28893 | Sorghum | nucleus | 5.52 | 5.36 |
| Zm00001d016791_P001 | Maize | mitochondrion | 9.2 | 5.23 |
| GSMUA_Achr3P08500_001 | Banana | nucleus | 7.36 | 5.22 |
| KXG28889 | Sorghum | nucleus | 7.98 | 5.2 |
| TraesCS7A01G561000.1 | Wheat | nucleus | 7.36 | 5.13 |
| TraesCS7A01G551000.1 | Wheat | nucleus | 9.82 | 5.11 |
| OQU83804 | Sorghum | mitochondrion | 7.36 | 5.11 |
| TraesCS6D01G024000.1 | Wheat | mitochondrion, nucleus | 5.52 | 4.89 |
| TraesCS2D01G150900.1 | Wheat | mitochondrion | 9.2 | 4.89 |
| KXG28892 | Sorghum | nucleus | 5.52 | 4.86 |
| Zm00001d048894_P001 | Maize | mitochondrion | 7.36 | 4.86 |
| TraesCS7D01G536700.1 | Wheat | nucleus | 9.2 | 4.79 |
| TraesCS3B01G159600.1 | Wheat | nucleus | 7.36 | 4.78 |
| EER91288 | Sorghum | mitochondrion, nucleus | 9.2 | 4.78 |
| KXG38099 | Sorghum | plastid | 9.2 | 4.76 |
| TraesCS2D01G128000.1 | Wheat | nucleus | 6.13 | 4.72 |
| TraesCS2B01G171700.1 | Wheat | mitochondrion | 5.52 | 4.71 |
| TraesCS2B01G146100.1 | Wheat | nucleus | 10.43 | 4.68 |
| TraesCS7A01G398800.1 | Wheat | nucleus | 8.59 | 4.35 |
| TraesCS7B01G299400.1 | Wheat | nucleus | 8.59 | 4.33 |
| TraesCS7B01G484600.1 | Wheat | nucleus | 4.29 | 4.27 |
| HORVU6Hr1G085670.1 | Barley | nucleus | 8.59 | 4.22 |
| TraesCS2A01G146400.1 | Wheat | mitochondrion | 9.2 | 4.21 |
| PGSC0003DMT400089615 | Potato | cytosol | 6.13 | 4.2 |
| TraesCS7A01G559500.1 | Wheat | nucleus | 4.91 | 4.19 |
| TraesCS7D01G393000.1 | Wheat | nucleus | 7.98 | 4.02 |
| OQU83806 | Sorghum | nucleus | 4.29 | 4.0 |
| EES10067 | Sorghum | mitochondrion | 4.91 | 3.88 |
| TraesCS6B01G028100.1 | Wheat | mitochondrion | 4.29 | 3.72 |
| TraesCS6A01G359700.1 | Wheat | nucleus | 4.91 | 3.52 |
| TraesCS6A01G020500.1 | Wheat | mitochondrion, nucleus | 3.07 | 3.21 |
| TraesCS6D01G342700.1 | Wheat | nucleus | 5.52 | 2.91 |
| CDY25744 | Canola | mitochondrion | 2.45 | 2.47 |
| TraesCS6B01G392600.1 | Wheat | nucleus | 4.29 | 2.26 |
| CDY04801 | Canola | mitochondrion, nucleus | 1.84 | 1.85 |
| CDY21372 | Canola | mitochondrion | 1.84 | 1.85 |
| GSMUA_Achr2P18410_001 | Banana | nucleus | 0.0 | 0.0 |
| HORVU6Hr1G003730.1 | Barley | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY05205 | EnsemblPlantsGene:GSBRNA2T00120012001 | ProteinID:CDY05205 | ProteinID:CDY05205.1 | SEG:seg | UniParc:UPI0004EE60E3 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC05g45980D
Coordinates
chrLK031960:-:357501..358097
Molecular Weight (calculated)
19348.5 Da
IEP (calculated)
6.336
GRAVY (calculated)
-1.103
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MMDNTESAMN ETMFQFLRGR EDMFQLTNKH RDDLCRHIDQ HLKELYHHRK LILNQSHLEY GESSSAANAM IQPAAIAEEG YYQMTNPVCG YHQHPSLNLN
101: FNPNQYQQKF VGYPNVAQDG NYNRTQNQNH QQEEMLVSQM MNNSNQVRFP MMDDNNRYNY HQP
101: FNPNQYQQKF VGYPNVAQDG NYNRTQNQNH QQEEMLVSQM MNNSNQVRFP MMDDNNRYNY HQP
001: MTRKKLNLSY ITNESMRKAT FNKRKKGLVK KIHELSVLCG IEACAVIYSP FNSNPEVWPS NSEVKNVMEN FEMLTKLEQE KKMVSHEGFI RQNISKTMES
101: NNKKMIDNAE RTMKEAMFQL LSGKGEKLNL TDRNREDLCK YIDQYLKELY HHKNKTINQS HIEPGESSGA TNAMTPTSVV EPIISSIQRP NQNPNFNHLS
201: HNQYQYQQQF GYPILVQDGI YNPSQIQNQH EEWLDDHMMN HSKEISHPLM DDNNFYYQQP
101: NNKKMIDNAE RTMKEAMFQL LSGKGEKLNL TDRNREDLCK YIDQYLKELY HHKNKTINQS HIEPGESSGA TNAMTPTSVV EPIISSIQRP NQNPNFNHLS
201: HNQYQYQQQF GYPILVQDGI YNPSQIQNQH EEWLDDHMMN HSKEISHPLM DDNNFYYQQP
Arabidopsis Description
MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4J9K3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.