Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88234 | Canola | nucleus | 84.16 | 92.9 |
| CDY25000 | Canola | nucleus | 57.92 | 54.17 |
| CDY05540 | Canola | nucleus | 55.94 | 52.31 |
| AT5G26630.1 | Thale cress | nucleus | 55.94 | 51.83 |
| GSMUA_Achr2P18410_001 | Banana | nucleus | 10.4 | 51.22 |
| HORVU6Hr1G003730.1 | Barley | nucleus | 16.83 | 40.0 |
| CDY33537 | Canola | nucleus | 37.13 | 38.27 |
| TraesCS6A01G020500.1 | Wheat | mitochondrion, nucleus | 26.24 | 33.97 |
| CDY64992 | Canola | mitochondrion, nucleus | 24.75 | 32.47 |
| CDY71896 | Canola | nucleus | 27.23 | 31.98 |
| TraesCS7B01G484600.1 | Wheat | nucleus | 24.26 | 29.88 |
| TraesCS3D01G138400.1 | Wheat | cytosol | 27.72 | 29.47 |
| GSMUA_Achr3P05500_001 | Banana | nucleus | 31.19 | 28.51 |
| TraesCS3B01G155200.1 | Wheat | cytosol | 27.23 | 28.21 |
| CDY25744 | Canola | mitochondrion | 22.28 | 27.78 |
| PGSC0003DMT400003073 | Potato | cytosol | 14.85 | 27.78 |
| TraesCS3A01G137500.1 | Wheat | cytosol | 27.23 | 27.64 |
| GSMUA_Achr3P08500_001 | Banana | nucleus | 31.19 | 27.39 |
| CDX97329 | Canola | nucleus | 39.11 | 27.24 |
| CDY04801 | Canola | mitochondrion, nucleus | 21.78 | 27.16 |
| CDY21372 | Canola | mitochondrion | 21.78 | 27.16 |
| KXG28892 | Sorghum | nucleus | 24.26 | 26.49 |
| CDY60402 | Canola | nucleus | 39.6 | 26.32 |
| OQU83806 | Sorghum | nucleus | 22.77 | 26.29 |
| KXG28893 | Sorghum | nucleus | 21.78 | 26.19 |
| TraesCS2B01G171700.1 | Wheat | mitochondrion | 24.75 | 26.18 |
| TraesCS7A01G559500.1 | Wheat | nucleus | 24.75 | 26.18 |
| TraesCS7B01G484000.1 | Wheat | nucleus | 23.76 | 25.95 |
| TraesCS7D01G550500.1 | Wheat | nucleus | 23.76 | 25.95 |
| EES10067 | Sorghum | mitochondrion | 26.24 | 25.73 |
| TraesCS7D01G548500.1 | Wheat | plastid | 29.7 | 25.53 |
| TraesCS7A01G561000.1 | Wheat | nucleus | 29.21 | 25.21 |
| TraesCS6D01G024000.1 | Wheat | mitochondrion, nucleus | 22.77 | 25.0 |
| Os03t0582400-01 | Rice | nucleus | 30.69 | 24.9 |
| TraesCS7B01G485400.1 | Wheat | nucleus | 28.71 | 24.79 |
| TraesCS6B01G391600.1 | Wheat | nucleus | 29.7 | 24.49 |
| TraesCS6B01G391700.1 | Wheat | nucleus | 29.7 | 24.49 |
| CDY27735 | Canola | nucleus | 32.18 | 24.34 |
| GSMUA_Achr3P24560_001 | Banana | nucleus | 27.72 | 24.14 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.72 | 24.03 |
| TraesCS6B01G028100.1 | Wheat | mitochondrion | 22.28 | 23.94 |
| TraesCS3B01G159600.1 | Wheat | nucleus | 29.7 | 23.9 |
| TraesCS6B01G027900.1 | Wheat | nucleus | 26.73 | 23.79 |
| TraesCS6D01G023800.1 | Wheat | mitochondrion | 26.73 | 23.79 |
| HORVU7Hr1G121600.1 | Barley | nucleus | 21.78 | 23.78 |
| GSMUA_Achr2P18400_001 | Banana | nucleus | 27.23 | 23.71 |
| HORVU6Hr1G085540.1 | Barley | mitochondrion | 26.73 | 23.58 |
| TraesCS3A01G312600.1 | Wheat | nucleus | 29.21 | 23.51 |
| TraesCS6A01G359100.1 | Wheat | mitochondrion | 30.2 | 23.37 |
| TraesCS6A01G358900.1 | Wheat | nucleus | 27.23 | 23.31 |
| TraesCS6D01G341700.1 | Wheat | nucleus | 27.72 | 23.24 |
| TraesCS6D01G342000.1 | Wheat | nucleus | 27.72 | 23.24 |
| Zm00001d013792_P001 | Maize | mitochondrion, nucleus | 31.68 | 23.02 |
| TraesCS6B01G391800.1 | Wheat | mitochondrion | 29.7 | 22.99 |
| TraesCS6D01G342100.1 | Wheat | mitochondrion | 29.7 | 22.99 |
| CDY05207 | Canola | nucleus | 37.62 | 22.75 |
| CDY27734 | Canola | nucleus | 37.62 | 22.62 |
| OQU83804 | Sorghum | mitochondrion | 26.24 | 22.55 |
| EES06917 | Sorghum | mitochondrion, nucleus | 28.71 | 22.39 |
| TraesCS6A01G020900.1 | Wheat | mitochondrion | 23.27 | 22.27 |
| TraesCS6B01G028300.1 | Wheat | mitochondrion | 23.27 | 22.27 |
| TraesCS6D01G024300.1 | Wheat | mitochondrion | 24.75 | 22.03 |
| TraesCS7B01G484100.1 | Wheat | mitochondrion, nucleus | 26.24 | 21.99 |
| HORVU6Hr1G085570.1 | Barley | mitochondrion, nucleus | 28.22 | 21.92 |
| TraesCS6D01G341800.1 | Wheat | mitochondrion, nucleus | 26.73 | 21.77 |
| TraesCS7D01G551000.1 | Wheat | nucleus | 25.25 | 21.61 |
| Zm00001d016791_P001 | Maize | mitochondrion | 30.69 | 21.6 |
| KXG28889 | Sorghum | nucleus | 26.73 | 21.6 |
| CDX80577 | Canola | mitochondrion, nucleus | 32.18 | 21.59 |
| HORVU2Hr1G022060.1 | Barley | nucleus, plastid | 21.78 | 21.46 |
| Zm00001d048894_P001 | Maize | mitochondrion | 26.24 | 21.46 |
| CDX88231 | Canola | nucleus | 29.21 | 21.38 |
| GSMUA_Achr8P06150_001 | Banana | nucleus | 25.74 | 21.22 |
| KXG28888 | Sorghum | nucleus | 26.73 | 21.18 |
| KXG28890 | Sorghum | mitochondrion | 26.73 | 21.18 |
| TraesCS7B01G484500.1 | Wheat | nucleus | 25.25 | 21.16 |
| TraesCS6A01G022700.1 | Wheat | mitochondrion | 23.76 | 21.15 |
| TraesCS7D01G550600.1 | Wheat | nucleus | 24.75 | 20.75 |
| KXG32310 | Sorghum | nucleus | 24.75 | 20.66 |
| TraesCS2D01G128000.1 | Wheat | nucleus | 20.79 | 19.81 |
| CDY38696 | Canola | nucleus | 27.23 | 19.78 |
| KXG38099 | Sorghum | plastid | 30.69 | 19.68 |
| TraesCS6A01G359700.1 | Wheat | nucleus | 21.29 | 18.94 |
| CDY18830 | Canola | nucleus | 31.19 | 18.31 |
| EER91288 | Sorghum | mitochondrion, nucleus | 27.23 | 17.52 |
| CDY70782 | Canola | nucleus | 27.72 | 17.34 |
| CDY71564 | Canola | nucleus | 28.71 | 17.11 |
| CDY05333 | Canola | nucleus | 28.71 | 15.38 |
| CDY05515 | Canola | nucleus | 28.71 | 15.38 |
| TraesCS7A01G551000.1 | Wheat | nucleus | 23.76 | 15.34 |
| TraesCS7D01G536700.1 | Wheat | nucleus | 23.76 | 15.34 |
| TraesCS6D01G342700.1 | Wheat | nucleus | 22.28 | 14.56 |
| CDY05205 | Canola | cytosol, mitochondrion, nucleus | 11.39 | 14.11 |
| TraesCS6B01G392600.1 | Wheat | nucleus | 21.29 | 13.87 |
| TraesCS2D01G150900.1 | Wheat | mitochondrion | 20.79 | 13.68 |
| CDY67043 | Canola | nucleus | 26.24 | 13.55 |
| TraesCS7A01G398800.1 | Wheat | nucleus | 21.29 | 13.35 |
| TraesCS7B01G299400.1 | Wheat | nucleus | 21.29 | 13.31 |
| TraesCS7D01G393000.1 | Wheat | nucleus | 21.29 | 13.31 |
| CDY05514 | Canola | nucleus | 22.28 | 12.5 |
| TraesCS2A01G146400.1 | Wheat | mitochondrion | 21.29 | 12.08 |
| HORVU6Hr1G085670.1 | Barley | nucleus | 19.31 | 11.75 |
| TraesCS2B01G146100.1 | Wheat | nucleus | 19.8 | 11.02 |
| PGSC0003DMT400089615 | Potato | cytosol | 1.49 | 1.26 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078CUU2 | EnsemblPlants:CDX80580 | ProteinID:CDX80580 | ProteinID:CDX80580.1 |
| GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00133705001 | InterPro:IPR002100 | InterPro:IPR036879 |
| InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF355 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EC3F50 | SEG:seg |
Description
BnaC07g28640D
Coordinates
chrLK031821:+:1442040..1442648
Molecular Weight (calculated)
22555.2 Da
IEP (calculated)
8.614
GRAVY (calculated)
-0.488
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRNRVKMAY IENETSRKAT FRKRKGGIMK KALELSTLCD VPIAVIVQSE YNSVPEVFPP SRQAMGNVVA RWDSLPLVDK TKKMMNQEQF IQQRITKATE
101: SCKKVAKENK ELAMKEVMYD CLRGDTAPCD LGEGELRDLG GVIDQYIKGL NRRIQVLMRD HASSSTSVVP DADVATSVAM PTAEMGSSSN VKDFDLNQTQ
201: SE
101: SCKKVAKENK ELAMKEVMYD CLRGDTAPCD LGEGELRDLG GVIDQYIKGL NRRIQVLMRD HASSSTSVVP DADVATSVAM PTAEMGSSSN VKDFDLNQTQ
201: SE
001: MTRQKVKMTF IENETARKST FKKRKKGLLK KAQELGILCG VPIFAVVNSP YELNPEVWPS REAANQVVSQ WKTMSVMDKT KKMVNQETFL QQRITKATES
101: WKKLRKENKE LEMKNIMFDC LSGKTLVSSI EKTELRDFGY VIEQQLKDVN RRIEILKRNN EPSSALVPVA APTTSSVMPV VEMGSSSVGF YDKVRDQIQI
201: TLNMKQTTND LDLNKKQW
101: WKKLRKENKE LEMKNIMFDC LSGKTLVSSI EKTELRDFGY VIEQQLKDVN RRIEILKRNN EPSSALVPVA APTTSSVMPV VEMGSSSVGF YDKVRDQIQI
201: TLNMKQTTND LDLNKKQW
Arabidopsis Description
MADS-box protein AGL35 [Source:UniProtKB/TrEMBL;Acc:Q7XJK7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.