Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G548500.1 | Wheat | plastid | 92.31 | 91.91 |
| TraesCS7B01G485400.1 | Wheat | nucleus | 89.32 | 89.32 |
| TraesCS3A01G137500.1 | Wheat | cytosol | 49.57 | 58.29 |
| GSMUA_Achr2P18410_001 | Banana | nucleus | 8.97 | 51.22 |
| TraesCS6A01G020500.1 | Wheat | mitochondrion, nucleus | 27.78 | 41.67 |
| GSMUA_Achr3P08500_001 | Banana | nucleus | 37.18 | 37.83 |
| KRG88863 | Soybean | mitochondrion, nucleus | 21.37 | 35.71 |
| KRG89836 | Soybean | nucleus | 22.65 | 35.57 |
| GSMUA_Achr2P18400_001 | Banana | nucleus | 34.62 | 34.91 |
| Os03t0582400-01 | Rice | nucleus | 36.32 | 34.14 |
| TraesCS7A01G559500.1 | Wheat | nucleus | 27.78 | 34.03 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.48 | 32.62 |
| KRG98150 | Soybean | mitochondrion, nucleus | 23.08 | 32.34 |
| CDY33537 | Canola | nucleus | 26.92 | 32.14 |
| VIT_14s0060g00300.t01 | Wine grape | nucleus | 32.05 | 31.78 |
| KRH30113 | Soybean | nucleus | 23.08 | 31.58 |
| AT5G27810.1 | Thale cress | cytosol, nucleus, plastid | 15.81 | 31.09 |
| TraesCS3A01G312600.1 | Wheat | nucleus | 33.33 | 31.08 |
| TraesCS6A01G359100.1 | Wheat | mitochondrion | 34.62 | 31.03 |
| KRH72060 | Soybean | nucleus | 22.65 | 30.99 |
| TraesCS6A01G358900.1 | Wheat | nucleus | 30.77 | 30.51 |
| TraesCS6A01G020900.1 | Wheat | mitochondrion | 27.35 | 30.33 |
| KRH33740 | Soybean | nucleus | 20.51 | 30.19 |
| CDX80580 | Canola | nucleus | 25.21 | 29.21 |
| TraesCS6A01G022700.1 | Wheat | mitochondrion | 28.21 | 29.07 |
| GSMUA_Achr3P24560_001 | Banana | nucleus | 28.63 | 28.88 |
| Bra005166.1-P | Field mustard | mitochondrion, nucleus | 15.38 | 28.8 |
| KRH66114 | Soybean | nucleus | 24.36 | 28.79 |
| CDY64992 | Canola | mitochondrion, nucleus | 18.8 | 28.57 |
| CDY71896 | Canola | nucleus | 20.94 | 28.49 |
| KRG97962 | Soybean | nucleus | 29.06 | 28.45 |
| KRG98152 | Soybean | nucleus | 23.08 | 28.42 |
| PGSC0003DMT400089787 | Potato | cytosol | 20.94 | 28.16 |
| KRH30919 | Soybean | nucleus | 29.06 | 28.1 |
| PGSC0003DMT400086956 | Potato | nucleus | 17.52 | 27.89 |
| GSMUA_Achr8P06150_001 | Banana | nucleus | 29.06 | 27.76 |
| KRG98149 | Soybean | nucleus | 25.21 | 27.7 |
| Solyc01g102260.2.1 | Tomato | nucleus | 29.06 | 27.31 |
| AT5G26630.1 | Thale cress | nucleus | 25.21 | 27.06 |
| Bra020555.1-P | Field mustard | nucleus | 24.79 | 26.85 |
| CDY05540 | Canola | nucleus | 24.79 | 26.85 |
| CDX88234 | Canola | nucleus | 20.94 | 26.78 |
| CDY25000 | Canola | nucleus | 24.36 | 26.39 |
| Bra024521.1-P | Field mustard | mitochondrion | 17.95 | 25.93 |
| CDY04801 | Canola | mitochondrion, nucleus | 17.95 | 25.93 |
| CDY21372 | Canola | mitochondrion | 17.95 | 25.93 |
| Bra009913.1-P | Field mustard | nucleus | 22.22 | 25.62 |
| KRH30119 | Soybean | cytosol | 17.52 | 25.47 |
| KRH30476 | Soybean | nucleus | 16.24 | 25.33 |
| KRH66052 | Soybean | mitochondrion, nucleus | 24.36 | 25.33 |
| KRG98143 | Soybean | nucleus | 22.65 | 25.12 |
| KRH30472 | Soybean | nucleus | 22.22 | 24.53 |
| AT3G05860.1 | Thale cress | nucleus | 26.92 | 24.23 |
| TraesCS6A01G359700.1 | Wheat | nucleus | 23.5 | 24.23 |
| KRG88915 | Soybean | mitochondrion, nucleus | 21.37 | 24.15 |
| Bra012335.1-P | Field mustard | mitochondrion | 16.67 | 24.07 |
| CDY25744 | Canola | mitochondrion | 16.67 | 24.07 |
| TraesCS7A01G551000.1 | Wheat | nucleus | 31.2 | 23.32 |
| AT1G22590.2 | Thale cress | mitochondrion, nucleus | 16.24 | 23.31 |
| Bra029469.1-P | Field mustard | nucleus | 29.91 | 23.03 |
| CDY60402 | Canola | nucleus | 29.91 | 23.03 |
| Bra018490.1-P | Field mustard | nucleus | 28.21 | 22.76 |
| CDX97329 | Canola | nucleus | 28.21 | 22.76 |
| KRH30473 | Soybean | mitochondrion, nucleus | 21.37 | 22.62 |
| PGSC0003DMT400003073 | Potato | cytosol | 10.26 | 22.22 |
| PGSC0003DMT400088489 | Potato | nucleus | 20.09 | 22.07 |
| AT1G65300.1 | Thale cress | nucleus | 26.07 | 21.94 |
| AT5G48670.1 | Thale cress | nucleus | 29.91 | 21.81 |
| CDY27735 | Canola | nucleus | 24.79 | 21.72 |
| PGSC0003DMT400089454 | Potato | nucleus | 22.65 | 21.63 |
| KRG98148 | Soybean | nucleus | 20.94 | 21.4 |
| KRH72066 | Soybean | mitochondrion, nucleus | 18.8 | 21.36 |
| KRG98142 | Soybean | nucleus | 24.36 | 21.35 |
| AT1G65330.1 | Thale cress | nucleus | 25.21 | 21.15 |
| KRG98147 | Soybean | mitochondrion, nucleus | 22.65 | 20.62 |
| TraesCS7A01G398800.1 | Wheat | nucleus | 27.78 | 20.19 |
| PGSC0003DMT400073719 | Potato | nucleus | 22.22 | 19.92 |
| Bra039404.1-P | Field mustard | nucleus | 24.79 | 19.21 |
| CDY05207 | Canola | nucleus | 26.92 | 18.86 |
| PGSC0003DMT400090953 | Potato | nucleus | 26.92 | 18.75 |
| PGSC0003DMT400090586 | Potato | nucleus | 18.8 | 18.72 |
| PGSC0003DMT400088654 | Potato | nucleus | 26.07 | 18.65 |
| Bra041022.1-P | Field mustard | nucleus | 26.5 | 18.56 |
| CDY27734 | Canola | nucleus | 26.5 | 18.45 |
| CDX80577 | Canola | mitochondrion, nucleus | 23.5 | 18.27 |
| CDX88231 | Canola | nucleus | 21.37 | 18.12 |
| CDY38696 | Canola | nucleus | 21.37 | 17.99 |
| Bra035448.1-P | Field mustard | nucleus | 20.09 | 17.8 |
| Bra035449.1-P | Field mustard | nucleus | 20.09 | 17.8 |
| PGSC0003DMT400095755 | Potato | nucleus | 26.07 | 17.73 |
| PGSC0003DMT400095062 | Potato | nucleus | 20.94 | 17.38 |
| PGSC0003DMT400091650 | Potato | nucleus | 19.23 | 17.37 |
| TraesCS2A01G146400.1 | Wheat | mitochondrion | 26.07 | 17.13 |
| KRG88914 | Soybean | cytosol | 15.81 | 16.89 |
| AT5G27960.1 | Thale cress | nucleus | 23.08 | 16.88 |
| AT2G28700.1 | Thale cress | nucleus | 23.08 | 16.41 |
| AT5G26650.1 | Thale cress | nucleus | 25.21 | 16.12 |
| PGSC0003DMT400087890 | Potato | cytosol | 7.69 | 16.07 |
| CDY18830 | Canola | nucleus | 23.5 | 15.99 |
| AT5G35120.1 | Thale cress | cytosol | 7.26 | 15.89 |
| KRH30471 | Soybean | nucleus | 20.51 | 15.84 |
| PGSC0003DMT400088008 | Potato | nucleus | 12.82 | 15.54 |
| AT1G59930.1 | Thale cress | cytosol | 8.55 | 15.15 |
| Bra009911.1-P | Field mustard | mitochondrion, nucleus | 23.5 | 15.11 |
| CDY71564 | Canola | nucleus | 21.79 | 15.04 |
| KRG88862 | Soybean | nucleus | 20.09 | 15.02 |
| Bra020552.1-P | Field mustard | nucleus | 21.79 | 14.96 |
| PGSC0003DMT400095426 | Potato | mitochondrion | 22.22 | 14.9 |
| AT5G26580.1 | Thale cress | nucleus | 21.79 | 14.78 |
| PGSC0003DMT400090516 | Potato | nucleus | 11.11 | 14.69 |
| CDY70782 | Canola | nucleus | 20.09 | 14.55 |
| PGSC0003DMT400061726 | Potato | nucleus | 20.09 | 14.37 |
| CDY05333 | Canola | nucleus | 23.08 | 14.32 |
| KRG98146 | Soybean | nucleus | 19.66 | 14.02 |
| CDY05515 | Canola | nucleus | 22.22 | 13.79 |
| AT1G31630.1 | Thale cress | mitochondrion | 19.66 | 13.57 |
| PGSC0003DMT400085623 | Potato | nucleus | 11.54 | 13.5 |
| PGSC0003DMT400085256 | Potato | nucleus | 21.79 | 13.49 |
| PGSC0003DMT400077258 | Potato | nucleus | 22.22 | 13.33 |
| Bra040248.1-P | Field mustard | nucleus | 23.5 | 13.32 |
| PGSC0003DMT400061724 | Potato | mitochondrion, nucleus | 21.79 | 13.32 |
| PGSC0003DMT400095417 | Potato | cytosol | 7.26 | 13.28 |
| Bra020525.1-P | Field mustard | nucleus | 21.79 | 12.91 |
| Bra020550.1-P | Field mustard | nucleus | 20.94 | 12.89 |
| CDY67043 | Canola | nucleus | 21.37 | 12.79 |
| Bra020524.1-P | Field mustard | nucleus | 18.8 | 12.22 |
| CDY05514 | Canola | nucleus | 18.8 | 12.22 |
| AT1G31640.1 | Thale cress | mitochondrion | 21.79 | 10.99 |
| PGSC0003DMT400086919 | Potato | nucleus | 11.54 | 10.98 |
| Solyc07g043080.1.1 | Tomato | cytosol | 5.13 | 9.68 |
| PGSC0003DMT400094378 | Potato | nucleus | 6.41 | 9.62 |
| PGSC0003DMT400086447 | Potato | cytosol | 7.26 | 8.85 |
| PGSC0003DMT400094113 | Potato | cytosol | 5.98 | 8.09 |
| CDY05205 | Canola | cytosol, mitochondrion, nucleus | 5.13 | 7.36 |
| PGSC0003DMT400085114 | Potato | cytosol, endoplasmic reticulum, nucleus | 8.55 | 7.09 |
| PGSC0003DMT400097522 | Potato | cytosol, extracellular, mitochondrion, nucleus | 2.56 | 5.13 |
| PGSC0003DMT400085093 | Potato | extracellular, plastid, vacuole | 3.42 | 3.98 |
| PGSC0003DMT400091747 | Potato | plastid | 2.56 | 3.95 |
| PGSC0003DMT400061722 | Potato | plastid | 1.71 | 3.85 |
| PGSC0003DMT400065010 | Potato | vacuole | 2.99 | 3.5 |
| PGSC0003DMT400089615 | Potato | cytosol | 2.99 | 2.94 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF153 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| EnsemblPlantsGene:TraesCS7A01G561000 | EnsemblPlants:TraesCS7A01G561000.1 | TIGR:cd00266 | : | : | : |
Description
No Description!
Coordinates
chr7A:+:732401881..732402585
Molecular Weight (calculated)
25838.0 Da
IEP (calculated)
8.772
GRAVY (calculated)
-0.472
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKKVNMEY IAHGSPRKAT FKKRGIGMKK KARELSTLCG VDVCYVMYYP EGESSQVPEV YPSVPEAMRV IDRFRSTPEL DRCKKKIGGE DYIRERISKL
101: QEQLSKARCD SHRLETKVLL HDVLVGHRQS LAGLNIEQLA SLGWMADNYM KKVSDCIASN KSRRHADPLH CAAIGADVNA EGPPLQGWAT EVVKPGPDVD
201: SAAYGGNADG DVTQISNLAV GFAWADRGPH FPRV
101: QEQLSKARCD SHRLETKVLL HDVLVGHRQS LAGLNIEQLA SLGWMADNYM KKVSDCIASN KSRRHADPLH CAAIGADVNA EGPPLQGWAT EVVKPGPDVD
201: SAAYGGNADG DVTQISNLAV GFAWADRGPH FPRV
001: MTRKKLNLSY ITNESMRKAT FNKRKKGLVK KIHELSVLCG IEACAVIYSP FNSNPEVWPS NSEVKNVMEN FEMLTKLEQE KKMVSHEGFI RQNISKTMES
101: NNKKMIDNAE RTMKEAMFQL LSGKGEKLNL TDRNREDLCK YIDQYLKELY HHKNKTINQS HIEPGESSGA TNAMTPTSVV EPIISSIQRP NQVNIFSSNF
201: LSSDADQ
101: NNKKMIDNAE RTMKEAMFQL LSGKGEKLNL TDRNREDLCK YIDQYLKELY HHKNKTINQS HIEPGESSGA TNAMTPTSVV EPIISSIQRP NQVNIFSSNF
201: LSSDADQ
Arabidopsis Description
MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4J9K3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.