Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400090953 | Potato | nucleus | 88.66 | 90.77 |
| PGSC0003DMT400094378 | Potato | nucleus | 40.41 | 89.1 |
| PGSC0003DMT400085623 | Potato | nucleus | 49.71 | 85.5 |
| PGSC0003DMT400088489 | Potato | nucleus | 52.91 | 85.45 |
| PGSC0003DMT400088654 | Potato | nucleus | 78.49 | 82.57 |
| PGSC0003DMT400089787 | Potato | cytosol | 41.28 | 81.61 |
| PGSC0003DMT400086919 | Potato | nucleus | 56.4 | 78.86 |
| PGSC0003DMT400095062 | Potato | nucleus | 62.5 | 76.24 |
| PGSC0003DMT400094113 | Potato | cytosol | 37.5 | 74.57 |
| PGSC0003DMT400090516 | Potato | nucleus | 38.08 | 74.01 |
| PGSC0003DMT400095426 | Potato | mitochondrion | 61.05 | 60.17 |
| PGSC0003DMT400003073 | Potato | cytosol | 17.15 | 54.63 |
| PGSC0003DMT400091650 | Potato | nucleus | 40.99 | 54.44 |
| PGSC0003DMT400089454 | Potato | nucleus | 36.05 | 50.61 |
| PGSC0003DMT400086956 | Potato | nucleus | 21.22 | 49.66 |
| PGSC0003DMT400077258 | Potato | nucleus | 49.71 | 43.85 |
| PGSC0003DMT400085256 | Potato | nucleus | 45.35 | 41.27 |
| PGSC0003DMT400087890 | Potato | cytosol | 13.37 | 41.07 |
| PGSC0003DMT400097522 | Potato | cytosol, extracellular, mitochondrion, nucleus | 13.66 | 40.17 |
| PGSC0003DMT400088008 | Potato | nucleus | 22.38 | 39.9 |
| PGSC0003DMT400073719 | Potato | nucleus | 30.23 | 39.85 |
| PGSC0003DMT400090586 | Potato | nucleus | 26.74 | 39.15 |
| GSMUA_Achr2P18410_001 | Banana | nucleus | 4.65 | 39.02 |
| PGSC0003DMT400061724 | Potato | mitochondrion, nucleus | 41.86 | 37.6 |
| PGSC0003DMT400095417 | Potato | cytosol | 13.08 | 35.16 |
| PGSC0003DMT400061726 | Potato | nucleus | 31.69 | 33.33 |
| PGSC0003DMT400089615 | Potato | cytosol | 22.97 | 33.19 |
| PGSC0003DMT400091747 | Potato | plastid | 14.24 | 32.24 |
| PGSC0003DMT400085114 | Potato | cytosol, endoplasmic reticulum, nucleus | 25.29 | 30.85 |
| GSMUA_Achr3P24560_001 | Banana | nucleus | 20.35 | 30.17 |
| PGSC0003DMT400085093 | Potato | extracellular, plastid, vacuole | 16.57 | 28.36 |
| HORVU6Hr1G003730.1 | Barley | nucleus | 6.98 | 28.24 |
| GSMUA_Achr3P05500_001 | Banana | nucleus | 18.02 | 28.05 |
| PGSC0003DMT400061722 | Potato | plastid | 8.43 | 27.88 |
| PGSC0003DMT400065010 | Potato | vacuole | 15.99 | 27.5 |
| PGSC0003DMT400086447 | Potato | cytosol | 15.12 | 27.08 |
| HORVU7Hr1G121600.1 | Barley | nucleus | 14.53 | 27.03 |
| GSMUA_Achr3P08500_001 | Banana | nucleus | 18.02 | 26.96 |
| TraesCS6A01G020500.1 | Wheat | mitochondrion, nucleus | 12.21 | 26.92 |
| TraesCS7B01G484600.1 | Wheat | nucleus | 12.79 | 26.83 |
| TraesCS6B01G391600.1 | Wheat | nucleus | 18.9 | 26.53 |
| TraesCS7D01G548500.1 | Wheat | plastid | 18.02 | 26.38 |
| AT1G22590.2 | Thale cress | mitochondrion, nucleus | 12.5 | 26.38 |
| HORVU6Hr1G085540.1 | Barley | mitochondrion | 17.44 | 26.2 |
| TraesCS6D01G341700.1 | Wheat | nucleus | 18.31 | 26.14 |
| TraesCS6D01G342000.1 | Wheat | nucleus | 18.31 | 26.14 |
| TraesCS6B01G391700.1 | Wheat | nucleus | 18.6 | 26.12 |
| TraesCS7A01G561000.1 | Wheat | nucleus | 17.73 | 26.07 |
| TraesCS7B01G485400.1 | Wheat | nucleus | 17.73 | 26.07 |
| Bra012335.1-P | Field mustard | mitochondrion | 12.21 | 25.93 |
| Bra024521.1-P | Field mustard | mitochondrion | 12.21 | 25.93 |
| CDY04801 | Canola | mitochondrion, nucleus | 12.21 | 25.93 |
| CDY21372 | Canola | mitochondrion | 12.21 | 25.93 |
| CDY25744 | Canola | mitochondrion | 12.21 | 25.93 |
| Os03t0582400-01 | Rice | nucleus | 18.6 | 25.7 |
| TraesCS6A01G358900.1 | Wheat | nucleus | 17.44 | 25.42 |
| KXG32310 | Sorghum | nucleus | 17.73 | 25.21 |
| TraesCS6B01G027900.1 | Wheat | nucleus | 16.57 | 25.11 |
| TraesCS6D01G023800.1 | Wheat | mitochondrion | 16.57 | 25.11 |
| GSMUA_Achr2P18400_001 | Banana | nucleus | 16.86 | 25.0 |
| Zm00001d013792_P001 | Maize | mitochondrion, nucleus | 20.06 | 24.82 |
| TraesCS7A01G559500.1 | Wheat | nucleus | 13.66 | 24.61 |
| GSMUA_Achr8P06150_001 | Banana | nucleus | 17.44 | 24.49 |
| GSMUA_AchrUn_... | Banana | nucleus | 16.57 | 24.46 |
| KXG28892 | Sorghum | nucleus | 13.08 | 24.32 |
| TraesCS3B01G155200.1 | Wheat | cytosol | 13.66 | 24.1 |
| EES06917 | Sorghum | mitochondrion, nucleus | 18.02 | 23.94 |
| TraesCS7B01G484000.1 | Wheat | nucleus | 12.79 | 23.78 |
| TraesCS7D01G551000.1 | Wheat | nucleus | 16.28 | 23.73 |
| OQU83806 | Sorghum | nucleus | 11.92 | 23.43 |
| TraesCS6A01G022700.1 | Wheat | mitochondrion | 15.41 | 23.35 |
| TraesCS6D01G024300.1 | Wheat | mitochondrion | 15.41 | 23.35 |
| TraesCS7D01G550500.1 | Wheat | nucleus | 12.5 | 23.24 |
| KXG28893 | Sorghum | nucleus | 11.34 | 23.21 |
| TraesCS3D01G138400.1 | Wheat | cytosol | 12.79 | 23.16 |
| TraesCS6A01G359100.1 | Wheat | mitochondrion | 17.44 | 22.99 |
| TraesCS6D01G342100.1 | Wheat | mitochondrion | 17.44 | 22.99 |
| TraesCS6D01G024000.1 | Wheat | mitochondrion, nucleus | 12.21 | 22.83 |
| TraesCS7D01G550600.1 | Wheat | nucleus | 15.99 | 22.82 |
| HORVU6Hr1G085570.1 | Barley | mitochondrion, nucleus | 17.15 | 22.69 |
| TraesCS3A01G137500.1 | Wheat | cytosol | 13.08 | 22.61 |
| TraesCS2B01G171700.1 | Wheat | mitochondrion | 12.5 | 22.51 |
| TraesCS6B01G028100.1 | Wheat | mitochondrion | 12.21 | 22.34 |
| Zm00001d016791_P001 | Maize | mitochondrion | 18.6 | 22.3 |
| TraesCS6B01G391800.1 | Wheat | mitochondrion | 16.86 | 22.22 |
| TraesCS7B01G484100.1 | Wheat | mitochondrion, nucleus | 15.41 | 21.99 |
| TraesCS7B01G484500.1 | Wheat | nucleus | 15.41 | 21.99 |
| TraesCS3A01G312600.1 | Wheat | nucleus | 15.99 | 21.91 |
| TraesCS3B01G159600.1 | Wheat | nucleus | 15.99 | 21.91 |
| TraesCS6D01G341800.1 | Wheat | mitochondrion, nucleus | 15.41 | 21.37 |
| EES10067 | Sorghum | mitochondrion | 12.79 | 21.36 |
| TraesCS6B01G028300.1 | Wheat | mitochondrion | 13.08 | 21.33 |
| KXG38099 | Sorghum | plastid | 19.19 | 20.95 |
| TraesCS6A01G020900.1 | Wheat | mitochondrion | 12.79 | 20.85 |
| KXG28890 | Sorghum | mitochondrion | 15.41 | 20.78 |
| KXG28889 | Sorghum | nucleus | 14.83 | 20.4 |
| EER91288 | Sorghum | mitochondrion, nucleus | 18.6 | 20.38 |
| KXG28888 | Sorghum | nucleus | 14.83 | 20.0 |
| Zm00001d048894_P001 | Maize | mitochondrion | 13.95 | 19.43 |
| TraesCS2D01G128000.1 | Wheat | nucleus | 11.92 | 19.34 |
| TraesCS7A01G551000.1 | Wheat | nucleus | 17.44 | 19.17 |
| TraesCS7D01G536700.1 | Wheat | nucleus | 16.86 | 18.53 |
| TraesCS6A01G359700.1 | Wheat | nucleus | 12.21 | 18.5 |
| HORVU2Hr1G022060.1 | Barley | nucleus, plastid | 10.76 | 18.05 |
| OQU83804 | Sorghum | mitochondrion | 11.92 | 17.45 |
| TraesCS6D01G342700.1 | Wheat | nucleus | 15.41 | 17.15 |
| TraesCS6B01G392600.1 | Wheat | nucleus | 15.12 | 16.77 |
| TraesCS7B01G299400.1 | Wheat | nucleus | 15.41 | 16.41 |
| TraesCS7D01G393000.1 | Wheat | nucleus | 15.41 | 16.41 |
| TraesCS2D01G150900.1 | Wheat | mitochondrion | 13.95 | 15.64 |
| TraesCS7A01G398800.1 | Wheat | nucleus | 14.53 | 15.53 |
| HORVU6Hr1G085670.1 | Barley | nucleus | 13.66 | 14.16 |
| TraesCS2B01G146100.1 | Wheat | nucleus | 14.24 | 13.5 |
| TraesCS2A01G146400.1 | Wheat | mitochondrion | 13.95 | 13.48 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR036879 | UniProt:M1DX01 | InterPro:MADS_SRF-like | PFAM:PF00319 | EnsemblPlantsGene:PGSC0003DMG400045326 |
| PGSC:PGSC0003DMG400045326 | EnsemblPlants:PGSC0003DMT400095755 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF153 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00029684BA | SEG:seg |
Description
Type I MADS box transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400045326]
Coordinates
chr5:+:39101622..39102656
Molecular Weight (calculated)
39395.9 Da
IEP (calculated)
7.592
GRAVY (calculated)
-0.505
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRNKVNYAL IEDASKRKVS YNKRLKGFLK KSDELKTLCD VEVATVIYGP YRNEPYTFPN NVVLRNTFIE FKELLTLERS KKMVTREKFT MQRIKKLEEQ
101: LQKVRKENTV KEMTNVMYEV FNRKNVSADM NLSDLNDLRC VIKKNLKKVH ELIDKEDDGE GSTSNVPQPI VEPMAPSRNN SEEPRDPSPL LFSQMFPPMV
201: PQLFSSMPHH IAIGRPHGLT PPMPSTIMDS PIPSPMMDSL MPSPMIDSPM PSLMMAPPMY FLVSPTMTHQ MEPTMDIPSI GVSTSMYNNQ NSSVDLPDSP
301: TISGFLNWND DVVMTLLDDP FFKNLNVQDP KHTKKLRTNV CIFN
101: LQKVRKENTV KEMTNVMYEV FNRKNVSADM NLSDLNDLRC VIKKNLKKVH ELIDKEDDGE GSTSNVPQPI VEPMAPSRNN SEEPRDPSPL LFSQMFPPMV
201: PQLFSSMPHH IAIGRPHGLT PPMPSTIMDS PIPSPMMDSL MPSPMIDSPM PSLMMAPPMY FLVSPTMTHQ MEPTMDIPSI GVSTSMYNNQ NSSVDLPDSP
301: TISGFLNWND DVVMTLLDDP FFKNLNVQDP KHTKKLRTNV CIFN
001: MKRKMKLSLI ENSVSRKTTF TKRKKGMTKK LTELVTLCGV EACAVVYSPF NSIPEAWPSR EGVEDVVSKF MELSVLDRTK KMVDQETFIS QRIAKEKEQL
101: QKLRDENHNS QIRELMFGCL KGETNVYNLD GRDLQDLSLY IDKYLNGLTR RIEILIENGE SSSSLPLPIV ANAAAPVGFD GPMFQYHNQN QQKPVQFQYQ
201: ALYDFYDQIP KKIHGFNMNM NKDSNQSMVL DLNQNLNDGE DEGIPCMDNN NYHPEIDCLA TVTTAPTDVC APNITNDL
101: QKLRDENHNS QIRELMFGCL KGETNVYNLD GRDLQDLSLY IDKYLNGLTR RIEILIENGE SSSSLPLPIV ANAAAPVGFD GPMFQYHNQN QQKPVQFQYQ
201: ALYDFYDQIP KKIHGFNMNM NKDSNQSMVL DLNQNLNDGE DEGIPCMDNN NYHPEIDCLA TVTTAPTDVC APNITNDL
Arabidopsis Description
PHE2MADS-box transcription factor PHERES 2 [Source:UniProtKB/Swiss-Prot;Acc:Q7XJK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.