Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400094113 | Potato | cytosol | 56.5 | 80.35 |
| PGSC0003DMT400094378 | Potato | nucleus | 50.41 | 79.49 |
| PGSC0003DMT400090516 | Potato | nucleus | 52.03 | 72.32 |
| PGSC0003DMT400085623 | Potato | nucleus | 58.13 | 71.5 |
| PGSC0003DMT400088654 | Potato | nucleus | 86.18 | 64.83 |
| PGSC0003DMT400090953 | Potato | nucleus | 78.46 | 57.44 |
| PGSC0003DMT400095755 | Potato | nucleus | 78.86 | 56.4 |
| PGSC0003DMT400095062 | Potato | nucleus | 63.01 | 54.96 |
| PGSC0003DMT400088489 | Potato | nucleus | 40.24 | 46.48 |
| PGSC0003DMT400089787 | Potato | cytosol | 30.89 | 43.68 |
| PGSC0003DMT400097522 | Potato | cytosol, extracellular, mitochondrion, nucleus | 17.07 | 35.9 |
| PGSC0003DMT400095426 | Potato | mitochondrion | 50.81 | 35.82 |
| PGSC0003DMT400087890 | Potato | cytosol | 15.04 | 33.04 |
| PGSC0003DMT400089615 | Potato | cytosol | 31.3 | 32.35 |
| PGSC0003DMT400088008 | Potato | nucleus | 24.39 | 31.09 |
| PGSC0003DMT400095417 | Potato | cytosol | 15.04 | 28.91 |
| PGSC0003DMT400003073 | Potato | cytosol | 12.6 | 28.7 |
| PGSC0003DMT400077258 | Potato | nucleus | 45.12 | 28.46 |
| PGSC0003DMT400091747 | Potato | plastid | 17.48 | 28.29 |
| PGSC0003DMT400091650 | Potato | nucleus | 28.86 | 27.41 |
| PGSC0003DMT400073719 | Potato | nucleus | 28.05 | 26.44 |
| PGSC0003DMT400085114 | Potato | cytosol, endoplasmic reticulum, nucleus | 30.08 | 26.24 |
| PGSC0003DMT400085256 | Potato | nucleus | 39.84 | 25.93 |
| PGSC0003DMT400085093 | Potato | extracellular, plastid, vacuole | 21.14 | 25.87 |
| PGSC0003DMT400089454 | Potato | nucleus | 25.61 | 25.71 |
| PGSC0003DMT400065010 | Potato | vacuole | 20.33 | 25.0 |
| PGSC0003DMT400061722 | Potato | plastid | 10.16 | 24.04 |
| PGSC0003DMT400061724 | Potato | mitochondrion, nucleus | 36.99 | 23.76 |
| PGSC0003DMT400086447 | Potato | cytosol | 18.29 | 23.44 |
| PGSC0003DMT400090586 | Potato | nucleus | 19.51 | 20.43 |
| PGSC0003DMT400061726 | Potato | nucleus | 23.98 | 18.04 |
| PGSC0003DMT400086956 | Potato | nucleus | 9.35 | 15.65 |
| GSMUA_Achr3P24560_001 | Banana | nucleus | 13.41 | 14.22 |
| TraesCS6A01G358900.1 | Wheat | nucleus | 13.01 | 13.56 |
| TraesCS6D01G341700.1 | Wheat | nucleus | 13.01 | 13.28 |
| TraesCS6D01G342000.1 | Wheat | nucleus | 12.6 | 12.86 |
| GSMUA_Achr3P05500_001 | Banana | nucleus | 11.38 | 12.67 |
| TraesCS6B01G391700.1 | Wheat | nucleus | 12.6 | 12.65 |
| TraesCS6A01G022700.1 | Wheat | mitochondrion | 11.38 | 12.33 |
| TraesCS6D01G024300.1 | Wheat | mitochondrion | 11.38 | 12.33 |
| TraesCS6B01G391600.1 | Wheat | nucleus | 12.2 | 12.24 |
| Zm00001d013792_P001 | Maize | mitochondrion, nucleus | 13.82 | 12.23 |
| HORVU6Hr1G085540.1 | Barley | mitochondrion | 11.38 | 12.23 |
| EES06917 | Sorghum | mitochondrion, nucleus | 12.6 | 11.97 |
| TraesCS6B01G027900.1 | Wheat | nucleus | 10.98 | 11.89 |
| TraesCS6D01G023800.1 | Wheat | mitochondrion | 10.98 | 11.89 |
| Os03t0582400-01 | Rice | nucleus | 11.79 | 11.65 |
| TraesCS7A01G561000.1 | Wheat | nucleus | 10.98 | 11.54 |
| TraesCS7B01G485400.1 | Wheat | nucleus | 10.98 | 11.54 |
| TraesCS7D01G548500.1 | Wheat | plastid | 10.98 | 11.49 |
| TraesCS7D01G551000.1 | Wheat | nucleus | 10.98 | 11.44 |
| GSMUA_Achr3P08500_001 | Banana | nucleus | 10.57 | 11.3 |
| TraesCS7B01G484100.1 | Wheat | mitochondrion, nucleus | 10.98 | 11.2 |
| TraesCS6A01G359100.1 | Wheat | mitochondrion | 11.79 | 11.11 |
| TraesCS6D01G342100.1 | Wheat | mitochondrion | 11.79 | 11.11 |
| TraesCS7B01G484600.1 | Wheat | nucleus | 7.32 | 10.98 |
| TraesCS7B01G484500.1 | Wheat | nucleus | 10.57 | 10.79 |
| TraesCS7D01G550600.1 | Wheat | nucleus | 10.57 | 10.79 |
| EER91288 | Sorghum | mitochondrion, nucleus | 13.41 | 10.51 |
| HORVU6Hr1G085570.1 | Barley | mitochondrion, nucleus | 10.98 | 10.38 |
| KXG32310 | Sorghum | nucleus | 10.16 | 10.33 |
| GSMUA_AchrUn_... | Banana | nucleus | 9.76 | 10.3 |
| TraesCS7B01G484000.1 | Wheat | nucleus | 7.72 | 10.27 |
| TraesCS3B01G155200.1 | Wheat | cytosol | 8.13 | 10.26 |
| KXG38099 | Sorghum | plastid | 13.01 | 10.16 |
| KXG28893 | Sorghum | nucleus | 6.91 | 10.12 |
| TraesCS6B01G391800.1 | Wheat | mitochondrion | 10.57 | 9.96 |
| TraesCS7A01G559500.1 | Wheat | nucleus | 7.72 | 9.95 |
| GSMUA_Achr2P18400_001 | Banana | nucleus | 9.35 | 9.91 |
| KXG28888 | Sorghum | nucleus | 10.16 | 9.8 |
| KXG28890 | Sorghum | mitochondrion | 10.16 | 9.8 |
| GSMUA_Achr8P06150_001 | Banana | nucleus | 9.76 | 9.8 |
| HORVU7Hr1G121600.1 | Barley | nucleus | 7.32 | 9.73 |
| KXG28892 | Sorghum | nucleus | 7.32 | 9.73 |
| TraesCS7D01G550500.1 | Wheat | nucleus | 7.32 | 9.73 |
| KXG28889 | Sorghum | nucleus | 9.76 | 9.6 |
| TraesCS6A01G020900.1 | Wheat | mitochondrion | 8.13 | 9.48 |
| TraesCS6B01G028300.1 | Wheat | mitochondrion | 8.13 | 9.48 |
| Zm00001d016791_P001 | Maize | mitochondrion | 10.98 | 9.41 |
| TraesCS6D01G342700.1 | Wheat | nucleus | 11.79 | 9.39 |
| AT1G22590.2 | Thale cress | mitochondrion, nucleus | 6.1 | 9.2 |
| TraesCS3A01G137500.1 | Wheat | cytosol | 7.32 | 9.05 |
| TraesCS6B01G028100.1 | Wheat | mitochondrion | 6.91 | 9.04 |
| TraesCS6A01G020500.1 | Wheat | mitochondrion, nucleus | 5.69 | 8.97 |
| TraesCS3D01G138400.1 | Wheat | cytosol | 6.91 | 8.95 |
| TraesCS6D01G341800.1 | Wheat | mitochondrion, nucleus | 8.94 | 8.87 |
| TraesCS3A01G312600.1 | Wheat | nucleus | 8.94 | 8.76 |
| EES10067 | Sorghum | mitochondrion | 7.32 | 8.74 |
| TraesCS6B01G392600.1 | Wheat | nucleus | 10.98 | 8.71 |
| TraesCS6D01G024000.1 | Wheat | mitochondrion, nucleus | 6.5 | 8.7 |
| TraesCS7A01G551000.1 | Wheat | nucleus | 10.98 | 8.63 |
| TraesCS7D01G536700.1 | Wheat | nucleus | 10.98 | 8.63 |
| Zm00001d048894_P001 | Maize | mitochondrion | 8.54 | 8.5 |
| TraesCS2B01G171700.1 | Wheat | mitochondrion | 6.5 | 8.38 |
| TraesCS6A01G359700.1 | Wheat | nucleus | 7.72 | 8.37 |
| TraesCS3B01G159600.1 | Wheat | nucleus | 8.54 | 8.37 |
| Bra024521.1-P | Field mustard | mitochondrion | 5.28 | 8.02 |
| CDY04801 | Canola | mitochondrion, nucleus | 5.28 | 8.02 |
| CDY21372 | Canola | mitochondrion | 5.28 | 8.02 |
| TraesCS2D01G128000.1 | Wheat | nucleus | 6.91 | 8.02 |
| HORVU6Hr1G085670.1 | Barley | nucleus | 10.16 | 7.53 |
| OQU83806 | Sorghum | nucleus | 5.28 | 7.43 |
| Bra012335.1-P | Field mustard | mitochondrion | 4.88 | 7.41 |
| CDY25744 | Canola | mitochondrion | 4.88 | 7.41 |
| TraesCS2D01G150900.1 | Wheat | mitochondrion | 8.94 | 7.17 |
| TraesCS7A01G398800.1 | Wheat | nucleus | 9.35 | 7.14 |
| TraesCS7B01G299400.1 | Wheat | nucleus | 9.35 | 7.12 |
| TraesCS7D01G393000.1 | Wheat | nucleus | 9.35 | 7.12 |
| OQU83804 | Sorghum | mitochondrion | 6.5 | 6.81 |
| TraesCS2B01G146100.1 | Wheat | nucleus | 9.35 | 6.34 |
| TraesCS2A01G146400.1 | Wheat | mitochondrion | 8.54 | 5.9 |
| HORVU2Hr1G022060.1 | Barley | nucleus, plastid | 4.88 | 5.85 |
| GSMUA_Achr2P18410_001 | Banana | nucleus | 0.0 | 0.0 |
| HORVU6Hr1G003730.1 | Barley | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400086919 | EnsemblPlantsGene:PGSC0003DMG400036490 | ncoils:Coil | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF355 | PGSC:PGSC0003DMG400036490 |
| SEG:seg | UniParc:UPI000295ACA1 | UniProt:M1DCS7 | MapMan:35.2 | : | : |
Description
Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400036490]
Coordinates
chr5:+:43429023..43429763
Molecular Weight (calculated)
27684.8 Da
IEP (calculated)
5.330
GRAVY (calculated)
-0.365
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MQRIKKLEEQ LQKVRKENRA KEMTYEMYEV FERKTVSIDM NPSYLNDLRC VIKKNLKQVR ELMIKEANGE GSTSNAPQLI VEPMVPSWNN SEGPTNPSPL
101: LFSQMFPPMV PQFFSPMPQH MAVGKTPGLT HLMPSTIMDS LIPSPTIDSL MPSPMIDSPM PSLMVAPPMY SPVSPTMNQE MELSMDIPSI GISTSMNNNQ
201: NSSVDLPDSP TISGFLNFKD GVVMTLLDDP FFKNINVQYP NHTKKI
101: LFSQMFPPMV PQFFSPMPQH MAVGKTPGLT HLMPSTIMDS LIPSPTIDSL MPSPMIDSPM PSLMVAPPMY SPVSPTMNQE MELSMDIPSI GISTSMNNNQ
201: NSSVDLPDSP TISGFLNFKD GVVMTLLDDP FFKNINVQYP NHTKKI
001: MTRQKVKMTF IENETARKST FKKRKKGLLK KAQELGILCG VPIFAVVNSP YELNPEVWPS REAANQVVSQ WKTMSVMDKT KKMVNQETFL QQRITKATES
101: WKKLRKENKE LEMKNIMFDC LSGKTLVSSI EKTELRDFGY VIEQQLKDVN RRIEILKRNN EPSSALVPVA APTTSSVMPV VEMGSSSVGF YDKVRDQIQI
201: TLNMKQTTND LDLNKKQW
101: WKKLRKENKE LEMKNIMFDC LSGKTLVSSI EKTELRDFGY VIEQQLKDVN RRIEILKRNN EPSSALVPVA APTTSSVMPV VEMGSSSVGF YDKVRDQIQI
201: TLNMKQTTND LDLNKKQW
Arabidopsis Description
MADS-box protein AGL35 [Source:UniProtKB/TrEMBL;Acc:Q7XJK7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.