Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G342000.1 | Wheat | nucleus | 90.46 | 90.46 |
| TraesCS6A01G358900.1 | Wheat | nucleus | 87.97 | 89.83 |
| TraesCS6B01G391700.1 | Wheat | nucleus | 83.4 | 82.04 |
| TraesCS6B01G391600.1 | Wheat | nucleus | 82.99 | 81.63 |
| HORVU6Hr1G085540.1 | Barley | mitochondrion | 77.18 | 81.22 |
| TraesCS6D01G341800.1 | Wheat | mitochondrion, nucleus | 72.61 | 70.56 |
| TraesCS7D01G550500.1 | Wheat | nucleus | 50.21 | 65.41 |
| TraesCS7D01G550600.1 | Wheat | nucleus | 65.15 | 65.15 |
| TraesCS7D01G551000.1 | Wheat | nucleus | 62.66 | 63.98 |
| GSMUA_Achr2P18410_001 | Banana | nucleus | 9.54 | 56.1 |
| TraesCS6D01G342100.1 | Wheat | mitochondrion | 59.75 | 55.17 |
| TraesCS6D01G024000.1 | Wheat | mitochondrion, nucleus | 40.66 | 53.26 |
| TraesCS7D01G536700.1 | Wheat | nucleus | 67.63 | 52.08 |
| TraesCS6D01G023800.1 | Wheat | mitochondrion | 48.13 | 51.1 |
| TraesCS6D01G024300.1 | Wheat | mitochondrion | 45.23 | 48.02 |
| TraesCS2D01G128000.1 | Wheat | nucleus | 39.0 | 44.34 |
| EES06917 | Sorghum | mitochondrion, nucleus | 40.66 | 37.84 |
| Zm00001d013792_P001 | Maize | mitochondrion, nucleus | 43.15 | 37.41 |
| Zm00001d016791_P001 | Maize | mitochondrion | 42.32 | 35.54 |
| TraesCS3D01G138400.1 | Wheat | cytosol | 27.8 | 35.26 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.2 | 34.33 |
| KRG88863 | Soybean | mitochondrion, nucleus | 19.92 | 34.29 |
| GSMUA_Achr3P08500_001 | Banana | nucleus | 32.37 | 33.91 |
| GSMUA_Achr2P18400_001 | Banana | nucleus | 31.95 | 33.19 |
| GSMUA_Achr3P24560_001 | Banana | nucleus | 31.95 | 33.19 |
| KXG38099 | Sorghum | plastid | 43.15 | 33.02 |
| TraesCS6D01G342700.1 | Wheat | nucleus | 41.49 | 32.36 |
| EER91288 | Sorghum | mitochondrion, nucleus | 41.49 | 31.85 |
| TraesCS2D01G150900.1 | Wheat | mitochondrion | 40.25 | 31.6 |
| VIT_14s0060g00300.t01 | Wine grape | nucleus | 30.71 | 31.36 |
| AT1G22590.2 | Thale cress | mitochondrion, nucleus | 21.16 | 31.29 |
| PGSC0003DMT400089787 | Potato | cytosol | 22.41 | 31.03 |
| TraesCS7D01G548500.1 | Wheat | plastid | 29.88 | 30.64 |
| PGSC0003DMT400086956 | Potato | nucleus | 18.67 | 30.61 |
| KRG89836 | Soybean | nucleus | 18.67 | 30.2 |
| Bra005166.1-P | Field mustard | mitochondrion, nucleus | 15.35 | 29.6 |
| TraesCS7D01G393000.1 | Wheat | nucleus | 39.42 | 29.41 |
| CDY64992 | Canola | mitochondrion, nucleus | 18.67 | 29.22 |
| CDY33537 | Canola | nucleus | 23.65 | 29.08 |
| KRH33740 | Soybean | nucleus | 19.09 | 28.93 |
| Solyc01g102260.2.1 | Tomato | nucleus | 29.05 | 28.11 |
| Bra012335.1-P | Field mustard | mitochondrion | 18.67 | 27.78 |
| CDY25744 | Canola | mitochondrion | 18.67 | 27.78 |
| AT5G27810.1 | Thale cress | cytosol, nucleus, plastid | 13.69 | 27.73 |
| CDX80580 | Canola | nucleus | 23.24 | 27.72 |
| Bra024521.1-P | Field mustard | mitochondrion | 18.26 | 27.16 |
| CDY04801 | Canola | mitochondrion, nucleus | 18.26 | 27.16 |
| CDY21372 | Canola | mitochondrion | 18.26 | 27.16 |
| KRG98152 | Soybean | nucleus | 21.16 | 26.84 |
| KRG97962 | Soybean | nucleus | 26.56 | 26.78 |
| CDX88234 | Canola | nucleus | 20.33 | 26.78 |
| Bra009913.1-P | Field mustard | nucleus | 22.41 | 26.6 |
| KRH30113 | Soybean | nucleus | 18.67 | 26.32 |
| KRH72060 | Soybean | nucleus | 18.67 | 26.32 |
| KRH30919 | Soybean | nucleus | 26.14 | 26.03 |
| KRH30476 | Soybean | nucleus | 16.18 | 26.0 |
| KRH30119 | Soybean | cytosol | 17.01 | 25.47 |
| KRG98149 | Soybean | nucleus | 22.41 | 25.35 |
| KRG98148 | Soybean | nucleus | 24.07 | 25.33 |
| KRG98150 | Soybean | mitochondrion, nucleus | 17.43 | 25.15 |
| CDY71896 | Canola | nucleus | 17.84 | 25.0 |
| PGSC0003DMT400003073 | Potato | cytosol | 11.2 | 25.0 |
| GSMUA_Achr8P06150_001 | Banana | nucleus | 25.31 | 24.9 |
| KRG98143 | Soybean | nucleus | 21.58 | 24.64 |
| KRH30472 | Soybean | nucleus | 21.58 | 24.53 |
| KRH66052 | Soybean | mitochondrion, nucleus | 22.82 | 24.44 |
| AT5G35120.1 | Thale cress | cytosol | 10.79 | 24.3 |
| AT5G26630.1 | Thale cress | nucleus | 21.58 | 23.85 |
| KRH30473 | Soybean | mitochondrion, nucleus | 21.58 | 23.53 |
| KRH66114 | Soybean | nucleus | 18.26 | 22.22 |
| KRG98147 | Soybean | mitochondrion, nucleus | 23.24 | 21.79 |
| KRG98142 | Soybean | nucleus | 24.07 | 21.72 |
| PGSC0003DMT400089454 | Potato | nucleus | 21.99 | 21.63 |
| PGSC0003DMT400095062 | Potato | nucleus | 25.31 | 21.63 |
| KRG88915 | Soybean | mitochondrion, nucleus | 18.26 | 21.26 |
| CDY27735 | Canola | nucleus | 23.24 | 20.97 |
| PGSC0003DMT400090586 | Potato | nucleus | 20.33 | 20.85 |
| Bra020555.1-P | Field mustard | nucleus | 18.67 | 20.83 |
| CDY05540 | Canola | nucleus | 18.67 | 20.83 |
| CDY25000 | Canola | nucleus | 18.67 | 20.83 |
| AT1G65300.1 | Thale cress | nucleus | 23.65 | 20.5 |
| AT1G59930.1 | Thale cress | cytosol | 11.2 | 20.45 |
| Bra018490.1-P | Field mustard | nucleus | 24.48 | 20.34 |
| CDX97329 | Canola | nucleus | 24.48 | 20.34 |
| PGSC0003DMT400088489 | Potato | nucleus | 17.84 | 20.19 |
| AT3G05860.1 | Thale cress | nucleus | 21.58 | 20.0 |
| KRH72066 | Soybean | mitochondrion, nucleus | 17.01 | 19.9 |
| PGSC0003DMT400088654 | Potato | nucleus | 26.97 | 19.88 |
| Bra029469.1-P | Field mustard | nucleus | 24.9 | 19.74 |
| CDY60402 | Canola | nucleus | 24.9 | 19.74 |
| PGSC0003DMT400073719 | Potato | nucleus | 21.16 | 19.54 |
| AT1G65330.1 | Thale cress | nucleus | 22.41 | 19.35 |
| PGSC0003DMT400091650 | Potato | nucleus | 20.75 | 19.3 |
| CDY38696 | Canola | nucleus | 21.99 | 19.06 |
| PGSC0003DMT400090953 | Potato | nucleus | 26.56 | 19.05 |
| AT5G48670.1 | Thale cress | nucleus | 25.31 | 19.0 |
| Bra035448.1-P | Field mustard | nucleus | 20.75 | 18.94 |
| Bra039404.1-P | Field mustard | nucleus | 23.65 | 18.87 |
| Bra035449.1-P | Field mustard | nucleus | 20.33 | 18.56 |
| PGSC0003DMT400095755 | Potato | nucleus | 26.14 | 18.31 |
| KRH30471 | Soybean | nucleus | 22.82 | 18.15 |
| KRG88862 | Soybean | nucleus | 22.82 | 17.57 |
| PGSC0003DMT400090516 | Potato | nucleus | 12.86 | 17.51 |
| PGSC0003DMT400087890 | Potato | cytosol | 7.88 | 16.96 |
| PGSC0003DMT400061726 | Potato | nucleus | 22.41 | 16.51 |
| CDY05207 | Canola | nucleus | 22.82 | 16.47 |
| CDY18830 | Canola | nucleus | 23.24 | 16.28 |
| AT2G28700.1 | Thale cress | nucleus | 21.99 | 16.11 |
| PGSC0003DMT400088008 | Potato | nucleus | 12.86 | 16.06 |
| PGSC0003DMT400095426 | Potato | mitochondrion | 23.24 | 16.05 |
| KRG88914 | Soybean | cytosol | 14.52 | 15.98 |
| Bra041022.1-P | Field mustard | nucleus | 21.99 | 15.87 |
| KRG98146 | Soybean | nucleus | 21.58 | 15.85 |
| CDY27734 | Canola | nucleus | 21.99 | 15.77 |
| AT5G27960.1 | Thale cress | nucleus | 20.75 | 15.62 |
| CDX88231 | Canola | nucleus | 17.84 | 15.58 |
| CDY71564 | Canola | nucleus | 21.58 | 15.34 |
| CDX80577 | Canola | mitochondrion, nucleus | 19.09 | 15.28 |
| PGSC0003DMT400077258 | Potato | nucleus | 24.48 | 15.13 |
| Bra020552.1-P | Field mustard | nucleus | 21.16 | 14.96 |
| PGSC0003DMT400061724 | Potato | mitochondrion, nucleus | 23.65 | 14.88 |
| PGSC0003DMT400095417 | Potato | cytosol | 7.88 | 14.84 |
| AT5G26580.1 | Thale cress | nucleus | 20.75 | 14.49 |
| AT5G26650.1 | Thale cress | nucleus | 21.99 | 14.48 |
| CDY70782 | Canola | nucleus | 19.09 | 14.24 |
| AT1G31630.1 | Thale cress | mitochondrion | 19.92 | 14.16 |
| Bra040248.1-P | Field mustard | nucleus | 23.24 | 13.56 |
| PGSC0003DMT400085256 | Potato | nucleus | 21.16 | 13.49 |
| Bra009911.1-P | Field mustard | mitochondrion, nucleus | 20.33 | 13.46 |
| PGSC0003DMT400086919 | Potato | nucleus | 13.28 | 13.01 |
| CDY05333 | Canola | nucleus | 20.33 | 13.0 |
| CDY67043 | Canola | nucleus | 20.75 | 12.79 |
| Bra020550.1-P | Field mustard | nucleus | 19.92 | 12.63 |
| PGSC0003DMT400085623 | Potato | nucleus | 10.37 | 12.5 |
| CDY05515 | Canola | nucleus | 19.5 | 12.47 |
| Bra020525.1-P | Field mustard | nucleus | 19.5 | 11.9 |
| Bra020524.1-P | Field mustard | nucleus | 17.01 | 11.39 |
| CDY05514 | Canola | nucleus | 17.01 | 11.39 |
| AT1G31640.1 | Thale cress | mitochondrion | 21.58 | 11.21 |
| PGSC0003DMT400086447 | Potato | cytosol | 8.71 | 10.94 |
| PGSC0003DMT400094113 | Potato | cytosol | 7.47 | 10.4 |
| PGSC0003DMT400094378 | Potato | nucleus | 6.64 | 10.26 |
| CDY05205 | Canola | cytosol, mitochondrion, nucleus | 6.64 | 9.82 |
| Solyc07g043080.1.1 | Tomato | cytosol | 4.98 | 9.68 |
| PGSC0003DMT400085114 | Potato | cytosol, endoplasmic reticulum, nucleus | 11.2 | 9.57 |
| PGSC0003DMT400097522 | Potato | cytosol, extracellular, mitochondrion, nucleus | 3.32 | 6.84 |
| PGSC0003DMT400089615 | Potato | cytosol | 5.81 | 5.88 |
| PGSC0003DMT400091747 | Potato | plastid | 2.9 | 4.61 |
| PGSC0003DMT400085093 | Potato | extracellular, plastid, vacuole | 3.73 | 4.48 |
| PGSC0003DMT400065010 | Potato | vacuole | 3.32 | 4.0 |
| PGSC0003DMT400061722 | Potato | plastid | 1.66 | 3.85 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G341700.1 | EnsemblPlantsGene:TraesCS6D01G341700 | Gene3D:3.40.1810.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | ncoils:Coil | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF153 | PFAM:PF00319 | PFscan:PS50066 |
| PRINTS:PR00404 | SEG:seg | SMART:SM00432 | SUPFAM:SSF55455 | MapMan:15.5.14 | : |
Description
No Description!
Coordinates
chr6D:+:441291375..441292100
Molecular Weight (calculated)
26773.1 Da
IEP (calculated)
7.165
GRAVY (calculated)
-0.479
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MARKKVTLKY ITHDSTRRSR FRKRLRSLMK KATELATMCD VKTCVVVYGE SDAEPKVFPS HAEAVDILNE FKSMPELGHC KKTMDQEAFL TQRIAKLRDQ
101: VDKARRECQD SEIRYLLYNI MHGNHPGLVD LSVEELARLG WKVDELLKSL GERMGKNHVQ APPPAPCVST NNIDMGSPPL YLASPQEEEG WLDMVSSGGD
201: VGTQVYGGNA SHDGAGFSGG GMMMQTQFSD LGFSSSPFPP M
101: VDKARRECQD SEIRYLLYNI MHGNHPGLVD LSVEELARLG WKVDELLKSL GERMGKNHVQ APPPAPCVST NNIDMGSPPL YLASPQEEEG WLDMVSSGGD
201: VGTQVYGGNA SHDGAGFSGG GMMMQTQFSD LGFSSSPFPP M
001: MTRKKVKLAY ISNDSSRKAT FKKRKKGLMK KVHELSTLCG ITACAIIYSP YDTNPEVWPS NSGVQRVVSE FRTLPEMDQH KKMVDQEGFL KQRIAKATET
101: LRRQRKDSRE LEMTEVMFQC LIGNMEMFHL NIVDLNDLGY MIEQYLKDVN RRIEILRNSG TEIGESSSVA VAASEGNIPM PNLVATTAPT TTIYEVGSSS
201: SFAAVANFVN PIDLQQFRHP AAQHVGLNEQ PQNLNLNLNQ NYNQNQEWFM EMMNHPEQMR YQTEQMGYQF MDDNHHNHIH HQPQEHQHQI HDESSNALDA
301: ANSSSIIPVT SSSITNKTWF H
101: LRRQRKDSRE LEMTEVMFQC LIGNMEMFHL NIVDLNDLGY MIEQYLKDVN RRIEILRNSG TEIGESSSVA VAASEGNIPM PNLVATTAPT TTIYEVGSSS
201: SFAAVANFVN PIDLQQFRHP AAQHVGLNEQ PQNLNLNLNQ NYNQNQEWFM EMMNHPEQMR YQTEQMGYQF MDDNHHNHIH HQPQEHQHQI HDESSNALDA
301: ANSSSIIPVT SSSITNKTWF H
Arabidopsis Description
AGL80Agamous-like MADS-box protein AGL80 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJK3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.