Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G240200.3 | Wheat | nucleus | 88.28 | 94.12 |
| TraesCS6B01G286400.1 | Wheat | nucleus | 83.79 | 93.82 |
| HORVU0Hr1G032300.1 | Barley | nucleus | 80.0 | 86.89 |
| HORVU6Hr1G066140.9 | Barley | nucleus | 80.0 | 86.57 |
| Os02t0682200-01 | Rice | nucleus | 70.69 | 82.0 |
| EES07448 | Sorghum | nucleus | 68.62 | 78.04 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 17.59 | 76.12 |
| GSMUA_Achr4P30120_001 | Banana | nucleus | 58.62 | 72.34 |
| VIT_15s0048g01270.t01 | Wine grape | nucleus | 59.31 | 70.49 |
| GSMUA_Achr1P00750_001 | Banana | nucleus | 57.93 | 69.42 |
| Zm00001d051465_P002 | Maize | nucleus | 67.24 | 66.55 |
| Solyc01g093960.2.1 | Tomato | nucleus | 57.24 | 65.87 |
| GSMUA_Achr2P10250_001 | Banana | nucleus | 54.83 | 65.7 |
| PGSC0003DMT400000383 | Potato | nucleus | 57.24 | 65.1 |
| KRH48304 | Soybean | nucleus | 53.45 | 63.27 |
| KRH65193 | Soybean | nucleus | 52.76 | 62.45 |
| AT2G45650.1 | Thale cress | nucleus | 50.0 | 57.54 |
| Zm00001d017614_P003 | Maize | nucleus | 54.14 | 56.68 |
| CDY18911 | Canola | nucleus | 45.86 | 56.12 |
| CDY18912 | Canola | nucleus | 45.52 | 54.77 |
| Bra004927.1-P | Field mustard | nucleus | 45.17 | 54.13 |
| CDX74754 | Canola | nucleus | 47.59 | 53.91 |
| Bra000392.1-P | Field mustard | nucleus | 46.21 | 52.14 |
| CDY53885 | Canola | nucleus | 46.21 | 52.14 |
| TraesCS7A01G122100.1 | Wheat | nucleus | 40.0 | 51.1 |
| TraesCS7A01G122000.1 | Wheat | nucleus | 40.0 | 51.1 |
| AT3G61120.1 | Thale cress | nucleus | 42.41 | 50.41 |
| TraesCS5A01G286800.1 | Wheat | nucleus | 43.1 | 49.6 |
| TraesCS7A01G260600.1 | Wheat | nucleus | 40.69 | 47.58 |
| CDX89097 | Canola | nucleus | 39.66 | 46.75 |
| Bra014454.1-P | Field mustard | nucleus | 36.55 | 46.09 |
| TraesCS5A01G391800.1 | Wheat | nucleus | 37.24 | 45.38 |
| TraesCS4A01G028200.1 | Wheat | nucleus | 35.52 | 44.4 |
| TraesCS4A01G058900.1 | Wheat | nucleus | 25.86 | 44.12 |
| TraesCS5A01G391700.1 | Wheat | nucleus | 36.21 | 43.03 |
| TraesCS4A01G028100.1 | Wheat | nucleus | 35.17 | 42.15 |
| TraesCS2A01G261200.2 | Wheat | nucleus | 38.28 | 40.51 |
| TraesCS1A01G045000.1 | Wheat | nucleus | 26.21 | 38.38 |
| TraesCS2A01G174300.3 | Wheat | nucleus | 35.17 | 38.2 |
| TraesCS7A01G111900.1 | Wheat | nucleus | 28.97 | 36.52 |
| TraesCS7A01G111800.1 | Wheat | nucleus | 28.62 | 36.09 |
| TraesCS1A01G125800.1 | Wheat | nucleus | 32.76 | 35.32 |
| TraesCS5A01G117500.1 | Wheat | nucleus | 30.0 | 34.25 |
| TraesCS7A01G111700.1 | Wheat | nucleus | 27.93 | 34.03 |
| TraesCS3A01G314300.1 | Wheat | nucleus | 31.72 | 33.7 |
| TraesCS6A01G292300.2 | Wheat | nucleus | 27.24 | 32.78 |
| TraesCS2A01G337900.1 | Wheat | nucleus | 26.9 | 32.5 |
| TraesCS1A01G044900.1 | Wheat | nucleus | 26.9 | 32.1 |
| CDY42485 | Canola | nucleus | 41.03 | 31.48 |
| TraesCS1A01G262700.1 | Wheat | endoplasmic reticulum | 28.97 | 30.55 |
| TraesCS4A01G078700.1 | Wheat | nucleus | 22.76 | 30.14 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000003 | GO:GO:0000977 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009553 | GO:GO:0009653 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010022 | GO:GO:0010093 | GO:GO:0010094 | GO:GO:0010582 |
| GO:GO:0040007 | GO:GO:0045893 | GO:GO:0045944 | GO:GO:0046983 | GO:GO:0048316 | GO:GO:0048437 |
| GO:GO:0048449 | GO:GO:0048455 | GO:GO:0048457 | GO:GO:0048459 | GO:GO:0048509 | GO:GO:0048833 |
| GO:GO:0080060 | GO:GO:0080112 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like |
| PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF146 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS6A01G259000 | EnsemblPlants:TraesCS6A01G259000.2 | TIGR:cd00265 | SEG:seg | : |
Description
No Description!
Coordinates
chr6A:+:481737160..481743909
Molecular Weight (calculated)
32790.3 Da
IEP (calculated)
9.014
GRAVY (calculated)
-0.583
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA GTTKTLERYQ HCCYNAQDSN GALSETQSWY QEMSKLKAKF
101: EALQRTQRHL LGEDLGPLSV KELQQLEKQL ECSLSLARQR KTQLMMEQVE ELRRKERQLG DINRQLKHKL DAEGSNSNNY RAMQQITWAA GTVVDEGAAA
201: YHMQQQQQQH PNHSAAMDCE PTLQIGYLRS STLHPPVPSP MHATELIIYA AGTLISSRLL IRQPIIFHGA APPEGRTTSC WGGFSELPSC
101: EALQRTQRHL LGEDLGPLSV KELQQLEKQL ECSLSLARQR KTQLMMEQVE ELRRKERQLG DINRQLKHKL DAEGSNSNNY RAMQQITWAA GTVVDEGAAA
201: YHMQQQQQQH PNHSAAMDCE PTLQIGYLRS STLHPPVPSP MHATELIIYA AGTLISSRLL IRQPIIFHGA APPEGRTTSC WGGFSELPSC
001: MGRGKVEVKR IENKITRQVT FSKRKSGLLK KAYELSVLCD AEVSLIIFST GGKLYEFSNV GVGRTIERYY RCKDNLLDND TLEDTQGLRQ EVTKLKCKYE
101: SLLRTHRNLV GEDLEGMSIK ELQTLERQLE GALSATRKQK TQVMMEQMEE LRRKERELGD INNKLKLETE DHDFKGFQDL LLNPVLTAGC STDFSLQSTH
201: QNYISDCNLG YFLQIGFQQH YEQGEGSSVT KSNARSDAET NFVQ
101: SLLRTHRNLV GEDLEGMSIK ELQTLERQLE GALSATRKQK TQVMMEQMEE LRRKERELGD INNKLKLETE DHDFKGFQDL LLNPVLTAGC STDFSLQSTH
201: QNYISDCNLG YFLQIGFQQH YEQGEGSSVT KSNARSDAET NFVQ
Arabidopsis Description
AGL13Agamous-like MADS-box protein AGL13 [Source:UniProtKB/Swiss-Prot;Acc:Q38837]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.