Skip to main content
crop-pal logo
Field mustard
Search for another protein from :
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000393.1-P
Bra004007.1-P
Bra004071.1-P
Bra004361.1-P
Bra004928.1-P
Bra007138.1-P
Bra007139.1-P
Bra009436.1-P
Bra009911.1-P
Bra010623.1-P
Bra011509.1-P
Bra011797.1-P
Bra012564.1-P
Bra012997.1-P
Bra013364.1-P
Bra015129.1-P
Bra015643.1-P
Bra017638.1-P
Bra018741.1-P
Bra018767.1-P
Bra019221.1-P
Bra020524.1-P
Bra020525.1-P
Bra020550.1-P
Bra020552.1-P
Bra020600.1-P
Bra020923.1-P
Bra028019.1-P
Bra028020.1-P
Bra029347.1-P
Bra029424.1-P
Bra030228.1-P
Bra031864.1-P
Bra035952.1-P
Bra038326.1-P
Bra038511.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G45650.1 Bra009911.1-P AT1G31630.1 15805477
AT2G45650.1 Bra020524.1-P AT1G31630.1 15805477
AT2G45650.1 Bra020525.1-P AT1G31630.1 15805477
AT2G45650.1 Bra020550.1-P AT1G31630.1 15805477
AT2G45650.1 Bra020552.1-P AT1G31630.1 15805477
AT2G45650.1 Bra009911.1-P AT1G31640.1 15805477
AT2G45650.1 Bra020524.1-P AT1G31640.1 15805477
AT2G45650.1 Bra020525.1-P AT1G31640.1 15805477
AT2G45650.1 Bra020550.1-P AT1G31640.1 15805477
AT2G45650.1 Bra020552.1-P AT1G31640.1 15805477
AT2G45650.1 Bra009436.1-P AT1G46408.1 15805477
AT2G45650.1 Bra020600.1-P AT1G48150.1 15805477
AT2G45650.1 Bra004007.1-P AT1G69120.1 15805477
AT2G45650.1 Bra004361.1-P AT1G69120.1 15805477
AT2G45650.1 Bra038326.1-P AT1G69120.1 15805477
AT2G45650.1 Bra015643.1-P AT1G77980.1 15805477
AT2G45650.1 Bra030228.1-P AT2G22540.1 15805477
AT2G45650.1 Bra038511.1-P AT2G22540.1 15805477
AT2G45650.1 Bra000393.1-P AT2G45660.1 15805477
AT2G45650.1 Bra004928.1-P AT2G45660.1 15805477
AT2G45650.1 Bra039324.1-P AT2G45660.1 15805477
AT2G45650.1 Bra011509.1-P AT3G57230.1 15805477
AT2G45650.1 Bra017638.1-P AT3G57230.1 15805477
AT2G45650.1 Bra029424.1-P AT4G11880.1 15805477
AT2G45650.1 Bra012564.1-P AT4G18960.1 9418042
AT2G45650.1 Bra013364.1-P AT4G18960.1 9418042
AT2G45650.1 Bra019221.1-P AT4G24540.1 15805477
AT2G45650.1 Bra010623.1-P AT4G37940.1 15805477
AT2G45650.1 Bra011797.1-P AT4G37940.1 15805477
AT2G45650.1 Bra004071.1-P AT5G27070.1 15805477
AT2G45650.1 Bra007138.1-P AT5G27070.1 15805477
AT2G45650.1 Bra007139.1-P AT5G27070.1 15805477
AT2G45650.1 Bra015129.1-P AT5G27070.1 15805477
AT2G45650.1 Bra018741.1-P AT5G27070.1 15805477
AT2G45650.1 Bra018767.1-P AT5G27070.1 15805477
AT2G45650.1 Bra020923.1-P AT5G27070.1 15805477
AT2G45650.1 Bra028019.1-P AT5G27070.1 15805477
AT2G45650.1 Bra028020.1-P AT5G27070.1 15805477
AT2G45650.1 Bra020600.1-P AT5G27130.1 15805477
AT2G45650.1 Bra012997.1-P AT5G60910.1 15805477
AT2G45650.1 Bra029347.1-P AT5G60910.1 15805477
AT2G45650.1 Bra035952.1-P AT5G60910.1 15805477
AT2G45650.1 Bra031864.1-P AT5G65330.1 15805477
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY18912 Canola nucleus 99.17 99.59
AT2G45650.1 Thale cress nucleus 85.12 81.75
Bra000392.1-P Field mustard nucleus 80.58 75.88
VIT_15s0048g01270.t01 Wine grape nucleus 65.29 64.75
KRH48304 Soybean nucleus 63.22 62.45
KRH65193 Soybean nucleus 62.4 61.63
GSMUA_Achr1P00750_001 Banana nucleus 59.92 59.92
GSMUA_Achr2P10250_001 Banana nucleus 59.5 59.5
GSMUA_Achr4P30120_001 Banana nucleus 57.02 58.72
Solyc01g093960.2.1 Tomato nucleus 58.68 56.35
PGSC0003DMT400000383 Potato nucleus 58.68 55.69
Os02t0682200-01 Rice nucleus 57.02 55.2
KXG26975 Sorghum nucleus 52.89 54.47
EES07448 Sorghum nucleus 56.2 53.33
Os04t0580700-01 Rice nucleus 54.96 52.36
HORVU0Hr1G032300.1 Barley nucleus 56.61 51.31
HORVU6Hr1G066140.9 Barley nucleus 56.61 51.12
TraesCS6B01G286400.1 Wheat nucleus 52.89 49.42
TraesCS6D01G240200.3 Wheat nucleus 54.55 48.53
Zm00001d051465_P002 Maize nucleus 55.79 46.08
TraesCS6A01G259000.2 Wheat nucleus 54.13 45.17
Bra039170.1-P Field mustard nucleus 45.04 43.6
Bra014454.1-P Field mustard nucleus 41.32 43.48
Bra004361.1-P Field mustard nucleus 33.88 43.39
Bra021470.1-P Field mustard nucleus 44.63 42.86
Bra008674.1-P Field mustard nucleus 44.63 42.86
Bra025411.1-P Field mustard nucleus 30.99 42.61
Zm00001d017614_P003 Maize nucleus 47.93 41.88
Bra006322.1-P Field mustard nucleus 42.98 41.6
Bra010955.1-P Field mustard nucleus 41.74 41.39
Bra032814.1-P Field mustard nucleus 42.98 41.11
Bra030032.1-P Field mustard nucleus 41.74 40.08
Bra029347.1-P Field mustard nucleus 38.84 39.17
Bra025126.1-P Field mustard nucleus 41.32 38.91
Bra026543.1-P Field mustard nucleus 42.98 38.66
Bra012997.1-P Field mustard nucleus 38.02 38.17
Bra035952.1-P Field mustard nucleus 38.02 38.17
Bra011021.1-P Field mustard nucleus 38.43 36.61
Bra037895.1-P Field mustard nucleus 34.3 36.09
Bra038326.1-P Field mustard nucleus 37.6 35.55
Bra000696.1-P Field mustard nucleus 33.88 35.5
Bra036201.1-P Field mustard nucleus 35.95 35.08
Bra017376.1-P Field mustard nucleus 34.3 34.16
Bra013364.1-P Field mustard nucleus 34.71 33.33
Bra004007.1-P Field mustard nucleus 37.19 33.21
Bra004716.1-P Field mustard nucleus 33.47 33.2
Bra012564.1-P Field mustard nucleus 33.88 32.67
Bra007419.1-P Field mustard nucleus 33.06 32.65
Bra039921.1-P Field mustard nucleus 30.58 32.6
Bra011797.1-P Field mustard nucleus 30.17 32.02
Bra030222.1-P Field mustard nucleus 29.75 31.72
Bra010623.1-P Field mustard nucleus 27.69 31.31
Bra014552.1-P Field mustard nucleus 31.82 31.05
Bra017638.1-P Field mustard nucleus 29.75 30.0
Bra003356.1-P Field mustard nucleus 30.17 26.74
Bra011509.1-P Field mustard nucleus 28.51 23.79
Bra040719.1-P Field mustard nucleus 13.64 19.41
Protein Annotations
MapMan:15.5.14Gene3D:3.40.1810.10EnsemblPlantsGene:Bra004927EnsemblPlants:Bra004927.1EnsemblPlants:Bra004927.1-Pncoils:Coil
GO:GO:0000977GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0045944GO:GO:0046983InterPro:IPR002100InterPro:IPR002487InterPro:IPR036879UniProt:M4CL41
InterPro:MADS_MEF2-likePFAM:PF00319PFAM:PF01486PRINTS:PR00404ScanProsite:PS00350PFscan:PS50066
PFscan:PS51297PANTHER:PTHR11945PANTHER:PTHR11945:SF146SMART:SM00432SUPFAM:SSF55455InterPro:TF_Kbox
InterPro:TF_MADSboxInterPro:TF_MADSbox_sfUniParc:UPI0002547FEFSEG:seg::
Description
AT2G45650 (E=5e-070) AGL6 | AGL6 (AGAMOUS-LIKE 6); DNA binding / transcription factor
Coordinates
chrA05:+:2526199..2528060
Molecular Weight (calculated)
27602.3 Da
IEP (calculated)
9.665
GRAVY (calculated)
-0.503
Length
242 amino acids
Sequence
(BLAST)
001: MGRGRVEMKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIVFSS RGKLYEFGSV GLYLVGILKG CVFYPKNWCQ EVAKLKAKYE SLVRTNRHLL
101: GEDIGEMGVK QLQALERQLE AALTATRQRK TQVMMEEMED LRKKERQLGD INKQLKIKFE AGGHAFKSFQ DFWPNSAASM MAGDPNNSKF PVQPSHPDSV
201: DRNTEPFLQI GFQQHYYVQG EGSSVPKSNV ACETNFVQDW VL
Best Arabidopsis Sequence Match ( AT2G45650.1 )
(BLAST)
001: MGRGRVEMKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSV GIESTIERYN RCYNCSLSNN KPEETTQSWC QEVTKLKSKY
101: ESLVRTNRNL LGEDLGEMGV KELQALERQL EAALTATRQR KTQVMMEEME DLRKKERQLG DINKQLKIKF ETEGHAFKTF QDLWANSAAS VAGDPNNSEF
201: PVEPSHPNVL DCNTEPFLQI GFQQHYYVQG EGSSVSKSNV AGETNFVQGW VL
Arabidopsis Description
AGL6AGAMOUS-like protein 6 [Source:UniProtKB/TrEMBL;Acc:Q1PEU3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.