Factsheet for Bra004071.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra000392.1-P
Bra002368.1-P
Bra004927.1-P
Bra006595.1-P
Bra009436.1-P
Bra010027.1-P
Bra011509.1-P
Bra014217.1-P
Bra017638.1-P
Bra018296.1-P
Bra018727.1-P
Bra032767.1-P
Bra033467.1-P
Bra033492.1-P
Bra037434.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27050.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G27050.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G27050.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G27050.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G27050.1	Bra006595.1-P	AT5G21274.1	17360592
AT5G27070.1	Bra009436.1-P	AT1G46408.1	15805477
AT5G27070.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G27070.1	Bra000214.1-P	AT2G41100.1	17360592
AT5G27070.1	Bra000392.1-P	AT2G45650.1	15805477
AT5G27070.1	Bra004927.1-P	AT2G45650.1	15805477
AT5G27070.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G27070.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G27070.1	Bra011509.1-P	AT3G57230.1	15805477
AT5G27070.1	Bra017638.1-P	AT3G57230.1	15805477
AT5G27070.1	Bra039723.1-P	AT4G14640.1	17360592
AT5G27070.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G27070.1	Bra006595.1-P	AT5G21274.1	17360592
AT5G27070.1	Bra010027.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra014217.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra018727.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra032767.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra033492.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra037434.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra010027.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra014217.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra018727.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra032767.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra033492.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra037434.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra010027.1-P	AT5G49490.1	15805477
AT5G27070.1	Bra014217.1-P	AT5G49490.1	15805477
AT5G27070.1	Bra018727.1-P	AT5G49490.1	15805477
AT5G27070.1	Bra032767.1-P	AT5G49490.1	15805477
AT5G27070.1	Bra033492.1-P	AT5G49490.1	15805477
AT5G27070.1	Bra037434.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra010027.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra014217.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra018727.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra032767.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra033492.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra037434.1-P	AT5G49490.1	15805477
AT5G27580.1	Bra009436.1-P	AT1G46408.1	15805477
AT5G27580.1	Bra010027.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra014217.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra018727.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra032767.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra033492.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra037434.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra010027.1-P	AT5G49420.1	15805477
AT5G27580.1	Bra014217.1-P	AT5G49420.1	15805477
AT5G27580.1	Bra018727.1-P	AT5G49420.1	15805477
AT5G27580.1	Bra032767.1-P	AT5G49420.1	15805477
AT5G27580.1	Bra033492.1-P	AT5G49420.1	15805477
AT5G27580.1	Bra037434.1-P	AT5G49420.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56522	Canola	nucleus	78.52	95.71
AT5G26865.1	Thale cress	nucleus	19.72	44.44
AT5G27050.1	Thale cress	nucleus	18.66	44.17
AT5G27944.1	Thale cress	nucleus	25.7	32.59
AT5G27090.1	Thale cress	nucleus, plastid	21.13	32.09
AT5G27580.1	Thale cress	nucleus	24.3	30.94
Bra007138.1-P	Field mustard	nucleus	29.58	29.89
AT5G26950.1	Thale cress	nucleus	29.23	28.72
AT5G27070.1	Thale cress	nucleus	28.52	28.22
Bra028019.1-P	Field mustard	nucleus	28.17	28.07
Bra020923.1-P	Field mustard	nucleus	19.72	26.79
Bra018741.1-P	Field mustard	nucleus	22.89	24.62
Bra028020.1-P	Field mustard	nucleus	22.18	23.95
Bra018767.1-P	Field mustard	nucleus	23.94	22.22
Bra015129.1-P	Field mustard	nucleus	24.65	21.94
Bra031864.1-P	Field mustard	nucleus	23.24	19.94
Bra007139.1-P	Field mustard	nucleus	11.27	18.82
Bra025607.1-P	Field mustard	nucleus	21.83	17.77
Bra025619.1-P	Field mustard	nucleus	22.89	17.71
Bra022341.1-P	Field mustard	plastid	21.13	16.3
Bra037571.1-P	Field mustard	mitochondrion, nucleus, plastid	19.01	15.79
Bra025609.1-P	Field mustard	nucleus	18.66	15.77

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra004071	EnsemblPlants:Bra004071.1	EnsemblPlants:Bra004071.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
UniProt:M4CIN7	PFAM:PF00319	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF350	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002541377	SEG:seg	:	:

Description

AT5G26950 (E=3e-027) AGL93 | AGL93; transcription factor

Coordinates

chrA07:+:16664760..16665614

Molecular Weight (calculated)

32336.6 Da

IEP (calculated)

6.358

GRAVY (calculated)

-0.495

Length

284 amino acids

Sequence
(BLAST)

001: MKMNKLLVRK DTVFKIASSA LYNARAATVL KKAFELSELC GVDVCIIWYD REGNLVKTWP ENEEAKVRAM AARYSMLSEE EKGKKRNNLS GFLYKKMIRD
101: KKESLRKRDN KFFQEVSELE DSLQSCLQTL KESLHLDQPQ DLSSNDSSLI NVYHHQASSL LSYPSSSSEN CVDDVSTTTT TMNHPQSKFS ILLFNHENGA
201: LTQLANPSAL PSFEQQPQIQ CNQNYGTNYM DLLLGEQGCN NVDLLMPTLF PPPMMMQTQT PNFQQFMQTQ PVYNQIPVFG TMLS

Best Arabidopsis Sequence Match ( AT5G27070.1 )
(BLAST)

001: MDSSMSTKKK TKLSVRNQTC FKKSSLSSSS TAKKTTNLSM REQTMFKKAL ELSTLCNIDV CVIYYGRDGK LIKTWPEDQS KVRDMAERFS RLHERERCKK
101: RTNLSLFLRK KILDDTKLSE KVLEMEDSLE SGLRVLQDKL LLLQPEKNQT EFGQTRAVSS TTNPLSPPPS LIEDHRHQQW TEPLMSGVSN TEQDLSTSSL
201: SQNQSRISVF LYNHDNRSFY QVPDSVSSFD QSALLGEQGS GLGSNFDLPP MVFPPQMQTQ TPLVPFDQFA AWNQAPSFAD PMMFPYN

Arabidopsis Description

AGL53Agamous-like MADS-box protein AGL53 [Source:UniProtKB/Swiss-Prot;Acc:Q7X9N2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.