Factsheet for Bra014217.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra004071.1-P
Bra006595.1-P
Bra007138.1-P
Bra007139.1-P
Bra015129.1-P
Bra018296.1-P
Bra018741.1-P
Bra018767.1-P
Bra020923.1-P
Bra025607.1-P
Bra025609.1-P
Bra025619.1-P
Bra028019.1-P
Bra028020.1-P
Bra031864.1-P
Bra033467.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38620.1	Bra031864.1-P	AT4G11250.1	15805477
AT5G38620.1	Bra004071.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra007138.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra007139.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra015129.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra018741.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra018767.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra020923.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra028019.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra028020.1-P	AT5G27070.1	15805477
AT5G38620.1	Bra004071.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra007138.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra007139.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra015129.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra018741.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra018767.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra020923.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra028019.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra028020.1-P	AT5G27580.1	15805477
AT5G38620.1	Bra025607.1-P	AT5G38740.1	15805477
AT5G38620.1	Bra025609.1-P	AT5G38740.1	15805477
AT5G38620.1	Bra025619.1-P	AT5G38740.1	15805477
AT5G38620.1	Bra025607.1-P	AT5G40220.1	15805477
AT5G38620.1	Bra025609.1-P	AT5G40220.1	15805477
AT5G38620.1	Bra025619.1-P	AT5G40220.1	15805477
AT5G38620.1	Bra031864.1-P	AT5G65330.1	15805477
AT5G49420.1	Bra031864.1-P	AT4G11250.1	15805477
AT5G49420.1	Bra004071.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra007138.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra007139.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra015129.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra018741.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra018767.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra020923.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra028019.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra028020.1-P	AT5G27070.1	15805477
AT5G49420.1	Bra004071.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra007138.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra007139.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra015129.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra018741.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra018767.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra020923.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra028019.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra028020.1-P	AT5G27580.1	15805477
AT5G49420.1	Bra025607.1-P	AT5G38740.1	15805477
AT5G49420.1	Bra025609.1-P	AT5G38740.1	15805477
AT5G49420.1	Bra025619.1-P	AT5G38740.1	15805477
AT5G49420.1	Bra025607.1-P	AT5G40120.1	15805477
AT5G49420.1	Bra025609.1-P	AT5G40120.1	15805477
AT5G49420.1	Bra025619.1-P	AT5G40120.1	15805477
AT5G49420.1	Bra025607.1-P	AT5G40220.1	15805477
AT5G49420.1	Bra025609.1-P	AT5G40220.1	15805477
AT5G49420.1	Bra025619.1-P	AT5G40220.1	15805477
AT5G49420.1	Bra031864.1-P	AT5G65330.1	15805477
AT5G49490.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G49490.1	Bra000214.1-P	AT2G41100.1	17360592
AT5G49490.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G49490.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G49490.1	Bra039723.1-P	AT4G14640.1	17360592
AT5G49490.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G49490.1	Bra006595.1-P	AT5G21274.1	17360592
AT5G49490.1	Bra004071.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra007138.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra007139.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra015129.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra018741.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra018767.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra020923.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra028019.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra028020.1-P	AT5G27070.1	15805477
AT5G49490.1	Bra004071.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra007138.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra007139.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra015129.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra018741.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra018767.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra020923.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra028019.1-P	AT5G27090.1	15805477
AT5G49490.1	Bra028020.1-P	AT5G27090.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16529	Canola	nucleus	96.39	96.74
Bra018727.1-P	Field mustard	nucleus	42.6	48.16
Bra040965.1-P	Field mustard	nucleus	27.08	37.88
Bra037434.1-P	Field mustard	nucleus	35.38	37.55
AT5G49490.1	Thale cress	nucleus	36.46	35.44
Bra027116.1-P	Field mustard	nucleus	27.8	31.69
Bra033492.1-P	Field mustard	nucleus	32.85	31.06
AT5G38620.1	Thale cress	nucleus	38.99	30.95
AT5G49420.1	Thale cress	nucleus	37.18	30.84
Bra010027.1-P	Field mustard	nucleus	35.02	28.12
Bra009436.1-P	Field mustard	nucleus	31.05	28.1
Bra032767.1-P	Field mustard	nucleus	26.71	23.95
Bra020600.1-P	Field mustard	nucleus	15.88	16.73

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra014217	EnsemblPlants:Bra014217.1	EnsemblPlants:Bra014217.1-P	GO:GO:0000982
GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M4DCK2	InterPro:MADS_SRF-like
PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF277	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002546351	SEG:seg	:

Description

AT5G49420 (E=2e-037) | MADS-box protein (AGL84)

Coordinates

chrA08:-:2437489..2438322

Molecular Weight (calculated)

30410.4 Da

IEP (calculated)

4.239

GRAVY (calculated)

-0.399

Length

277 amino acids

Sequence
(BLAST)

001: MVKRGGTKRK AEIKKITDKS SKAVTFTKRR DGLFSKAAQL CLLGDAQIAI LATPSSSHSN VSFFSFGHSS VDSVVSAYLS GQRPAPPPVP EDSKEMREDI
101: AVCMARKELG LGYWWEDEEL LASKSRDEIM EAMESMHILW KAAERLREDE AIDFDQREGS LEKMEDMSND QTTLISTEDD QIIAVCDSFF NNNNNNNAAS
201: LSATPADEDD HHHQIEAVSE NYCSNNMNAL LSPPAAAAGG GLNDQNLLDL DLANLDLDTI FEGLADLDAE FVASLLM

Best Arabidopsis Sequence Match ( AT5G49420.1 )
(BLAST)

001: MVKKGGTKRK IAIETIQKRD SLRVTCTKRR EGLYSKASQL CLLSDAQIAI LATPPSSESN VSFYSFGHSS VDAVVSAFLS GQRPVPKDNK ETREDVGICL
101: TRNNLGLGFW WNDESLARSE NPQEISEAID SMRTLLRNLK ELRADEALAC NQAFVNDRED LKNNDKCDFV SDHETHDQTL ILQSASPICC IPENLNEITQ
201: EPNQTLNIQS STSAICCVPD NSPENFNEIT EEQDQIRSIC ETFCVMDNNA ALPEMNLDYD QDIGFDTPFE SALNDWFSDN TTHQEISASI LNAVVDDQVS
301: VDLTPFSYFQ RCLDGDNLRF SDCFKDFANT ISAL

Arabidopsis Description

MADS-box protein [Source:UniProtKB/TrEMBL;Acc:Q7X9H5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.