Factsheet for Bra028019.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra000392.1-P
Bra002368.1-P
Bra004927.1-P
Bra006595.1-P
Bra009436.1-P
Bra010027.1-P
Bra011509.1-P
Bra014217.1-P
Bra017638.1-P
Bra018296.1-P
Bra018727.1-P
Bra032767.1-P
Bra033467.1-P
Bra033492.1-P
Bra037434.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27050.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G27050.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G27050.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G27050.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G27050.1	Bra006595.1-P	AT5G21274.1	17360592
AT5G27070.1	Bra009436.1-P	AT1G46408.1	15805477
AT5G27070.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G27070.1	Bra000214.1-P	AT2G41100.1	17360592
AT5G27070.1	Bra000392.1-P	AT2G45650.1	15805477
AT5G27070.1	Bra004927.1-P	AT2G45650.1	15805477
AT5G27070.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G27070.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G27070.1	Bra011509.1-P	AT3G57230.1	15805477
AT5G27070.1	Bra017638.1-P	AT3G57230.1	15805477
AT5G27070.1	Bra039723.1-P	AT4G14640.1	17360592
AT5G27070.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G27070.1	Bra006595.1-P	AT5G21274.1	17360592
AT5G27070.1	Bra010027.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra014217.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra018727.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra032767.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra033492.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra037434.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra010027.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra014217.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra018727.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra032767.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra033492.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra037434.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra010027.1-P	AT5G49490.1	15805477
AT5G27070.1	Bra014217.1-P	AT5G49490.1	15805477
AT5G27070.1	Bra018727.1-P	AT5G49490.1	15805477
AT5G27070.1	Bra032767.1-P	AT5G49490.1	15805477
AT5G27070.1	Bra033492.1-P	AT5G49490.1	15805477
AT5G27070.1	Bra037434.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra010027.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra014217.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra018727.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra032767.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra033492.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra037434.1-P	AT5G49490.1	15805477
AT5G27580.1	Bra009436.1-P	AT1G46408.1	15805477
AT5G27580.1	Bra010027.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra014217.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra018727.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra032767.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra033492.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra037434.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra010027.1-P	AT5G49420.1	15805477
AT5G27580.1	Bra014217.1-P	AT5G49420.1	15805477
AT5G27580.1	Bra018727.1-P	AT5G49420.1	15805477
AT5G27580.1	Bra032767.1-P	AT5G49420.1	15805477
AT5G27580.1	Bra033492.1-P	AT5G49420.1	15805477
AT5G27580.1	Bra037434.1-P	AT5G49420.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93744	Canola	nucleus	97.89	97.89
Bra007139.1-P	Field mustard	nucleus	53.33	89.41
Bra007138.1-P	Field mustard	nucleus	50.18	50.89
Bra028020.1-P	Field mustard	nucleus	44.21	47.91
AT5G26865.1	Thale cress	nucleus	19.3	43.65
AT5G27050.1	Thale cress	nucleus	17.54	41.67
Bra020923.1-P	Field mustard	nucleus	26.67	36.36
AT5G27944.1	Thale cress	nucleus	28.07	35.71
AT5G27090.1	Thale cress	nucleus, plastid	21.75	33.16
AT5G27580.1	Thale cress	nucleus	25.61	32.74
Bra018741.1-P	Field mustard	nucleus	29.47	31.82
Bra018767.1-P	Field mustard	nucleus	33.68	31.37
Bra015129.1-P	Field mustard	nucleus	34.74	31.03
AT5G27070.1	Thale cress	nucleus	29.47	29.27
Bra004071.1-P	Field mustard	nucleus	28.07	28.17
AT5G26950.1	Thale cress	nucleus	28.07	27.68
Bra022341.1-P	Field mustard	plastid	24.21	18.75
Bra037571.1-P	Field mustard	mitochondrion, nucleus, plastid	21.4	17.84
Bra025607.1-P	Field mustard	nucleus	21.4	17.48
Bra025609.1-P	Field mustard	nucleus	20.0	16.96
Bra025619.1-P	Field mustard	nucleus	21.05	16.35
Bra031864.1-P	Field mustard	nucleus	18.25	15.71

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra028019	EnsemblPlants:Bra028019.1	EnsemblPlants:Bra028019.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
UniProt:M4EGV4	PFAM:PF00319	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF350	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00025421EC	SEG:seg	:	:

Description

AT5G27580 (E=1e-034) AGL89 | AGL89; transcription factor

Coordinates

chrA09:+:19295523..19296380

Molecular Weight (calculated)

32593.9 Da

IEP (calculated)

7.606

GRAVY (calculated)

-0.787

Length

285 amino acids

Sequence
(BLAST)

001: MDSSSSSRNN KKVNKFSVRK QTLFKKPSTS LFERQETILR KAGELSTLCD SLICVIHYDR LGNLVKTWPE DESQVQGIAE RYSKLTHEEK QKKSTNLSKF
101: CNKKMHDEKK RFPIKFSQKV QELEGSLVDK LQLLQDILLR EDQSIMSEQN HNFPNYSSVP DHQQQSVSAT STEQDMSRGD VYNSAAATDQ LLNHQSKYSI
201: FLFNHENASF TQLLHSVSSS LQQTYYNNLS DNRALLGGQG FNFGFGNNNV TTALPEEQVN FGYYNNSLNN TQGFNFGYDF NNLCT

Best Arabidopsis Sequence Match ( AT5G26950.1 )
(BLAST)

001: MDSSMSTKKK TKLSVRNQTC FKKSSLSSSS TAKKTTNLSM REQTMFKKAL ELSTLCNIDV CVIYYGRDGK LIKTWPDDQS KVRDMAERFS RLHERERCKK
101: RTNLSLFLRK KILDDTKLSE KVLEMEDSLE SGLRVLQDKL LLLQPEKNQT EFGQTRAVSS TTNPLSPPPS LIEDHRHQQR TEPLMSGVSN TEQDLSTSSL
201: SQNQSKFSVF LYNHDNCSFY QVPDSVSSFD SLTSTGLLGE QGSGLGSSFD LPMVFPPQMQ TQTPLVPFDQ FAPWNQAPSF ADPMMFPYN

Arabidopsis Description

AGL93Agamous-like MADS-box protein AGL93 [Source:UniProtKB/Swiss-Prot;Acc:Q7X9H9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.