Factsheet for Bra018767.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra000392.1-P
Bra002368.1-P
Bra004927.1-P
Bra006595.1-P
Bra009436.1-P
Bra010027.1-P
Bra011509.1-P
Bra014217.1-P
Bra017638.1-P
Bra018296.1-P
Bra018727.1-P
Bra032767.1-P
Bra033467.1-P
Bra033492.1-P
Bra037434.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27050.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G27050.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G27050.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G27050.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G27050.1	Bra006595.1-P	AT5G21274.1	17360592
AT5G27070.1	Bra009436.1-P	AT1G46408.1	15805477
AT5G27070.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G27070.1	Bra000214.1-P	AT2G41100.1	17360592
AT5G27070.1	Bra000392.1-P	AT2G45650.1	15805477
AT5G27070.1	Bra004927.1-P	AT2G45650.1	15805477
AT5G27070.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G27070.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G27070.1	Bra011509.1-P	AT3G57230.1	15805477
AT5G27070.1	Bra017638.1-P	AT3G57230.1	15805477
AT5G27070.1	Bra039723.1-P	AT4G14640.1	17360592
AT5G27070.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G27070.1	Bra006595.1-P	AT5G21274.1	17360592
AT5G27070.1	Bra010027.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra014217.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra018727.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra032767.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra033492.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra037434.1-P	AT5G38620.1	15805477
AT5G27070.1	Bra010027.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra014217.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra018727.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra032767.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra033492.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra037434.1-P	AT5G49420.1	15805477
AT5G27070.1	Bra010027.1-P	AT5G49490.1	15805477
AT5G27070.1	Bra014217.1-P	AT5G49490.1	15805477
AT5G27070.1	Bra018727.1-P	AT5G49490.1	15805477
AT5G27070.1	Bra032767.1-P	AT5G49490.1	15805477
AT5G27070.1	Bra033492.1-P	AT5G49490.1	15805477
AT5G27070.1	Bra037434.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra010027.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra014217.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra018727.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra032767.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra033492.1-P	AT5G49490.1	15805477
AT5G27090.1	Bra037434.1-P	AT5G49490.1	15805477
AT5G27580.1	Bra009436.1-P	AT1G46408.1	15805477
AT5G27580.1	Bra010027.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra014217.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra018727.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra032767.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra033492.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra037434.1-P	AT5G38620.1	15805477
AT5G27580.1	Bra010027.1-P	AT5G49420.1	15805477
AT5G27580.1	Bra014217.1-P	AT5G49420.1	15805477
AT5G27580.1	Bra018727.1-P	AT5G49420.1	15805477
AT5G27580.1	Bra032767.1-P	AT5G49420.1	15805477
AT5G27580.1	Bra033492.1-P	AT5G49420.1	15805477
AT5G27580.1	Bra037434.1-P	AT5G49420.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93708	Canola	nucleus	88.56	98.19
Bra015129.1-P	Field mustard	nucleus	88.56	84.95
Bra020923.1-P	Field mustard	nucleus	57.52	84.21
Bra018741.1-P	Field mustard	nucleus	59.48	68.94
AT5G26865.1	Thale cress	nucleus	16.67	40.48
AT5G27050.1	Thale cress	nucleus	15.03	38.33
Bra007138.1-P	Field mustard	nucleus	33.66	36.65
Bra028019.1-P	Field mustard	nucleus	31.37	33.68
Bra028020.1-P	Field mustard	nucleus	28.43	33.08
AT5G27944.1	Thale cress	nucleus	23.86	32.59
AT5G27090.1	Thale cress	nucleus, plastid	18.95	31.02
AT5G27580.1	Thale cress	nucleus	21.9	30.04
AT5G27070.1	Thale cress	nucleus	25.16	26.83
AT5G26950.1	Thale cress	nucleus	24.84	26.3
Bra004071.1-P	Field mustard	nucleus	22.22	23.94
Bra007139.1-P	Field mustard	nucleus	12.42	22.35
Bra022341.1-P	Field mustard	plastid	19.93	16.58
Bra037571.1-P	Field mustard	mitochondrion, nucleus, plastid	17.97	16.08
Bra025609.1-P	Field mustard	nucleus	16.67	15.18
Bra031864.1-P	Field mustard	nucleus	16.34	15.11
Bra025607.1-P	Field mustard	nucleus	15.69	13.75
Bra025619.1-P	Field mustard	nucleus	14.71	12.26

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra018767	EnsemblPlants:Bra018767.1	EnsemblPlants:Bra018767.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
UniProt:M4DQH4	PFAM:PF00319	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF350	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000253EC53	SEG:seg	:

Description

AT5G27070 (E=1e-019) AGL53 | AGL53; transcription factor

Coordinates

chrA06:+:2093452..2094372

Molecular Weight (calculated)

34703.7 Da

IEP (calculated)

7.961

GRAVY (calculated)

-0.703

Length

306 amino acids

Sequence
(BLAST)

001: MDSLSSSTST KMKNNNKLSV RNQTRFKKPF LLLREKTILK KALELSILCD NDICVIHYDR EGNLVNTYPE DQCQVKHIVE RYRNLRDGEK IKKNTNLSQF
101: YNKKLVDEKR RSLTDAEERK RFTKKVGEFK SSLEHKLQIV KDRVRDLLYS QDHQTEPDQS TCLDVMSQQN HNFPTSSSGF FPQNDLSSSL IDEEDPLMNF
201: CPQVINNPVS VHQQQIGSSL TNLLMSGDAS GSSNDRSKFS MFLFNHETAT FTPLPNSVSS SFDQGLTPCS NNLITASHGA QGFNFGCSNN LNTQGFNFGC
301: NNNLCT

Best Arabidopsis Sequence Match ( AT5G26950.1 )
(BLAST)

001: MDSSMSTKKK TKLSVRNQTC FKKSSLSSSS TAKKTTNLSM REQTMFKKAL ELSTLCNIDV CVIYYGRDGK LIKTWPDDQS KVRDMAERFS RLHERERCKK
101: RTNLSLFLRK KILDDTKLSE KVLEMEDSLE SGLRVLQDKL LLLQPEKNQT EFGQTRAVSS TTNPLSPPPS LIEDHRHQQR TEPLMSGVSN TEQDLSTSSL
201: SQNQSKFSVF LYNHDNCSFY QVPDSVSSFD SLTSTGLLGE QGSGLGSSFD LPMVFPPQMQ TQTPLVPFDQ FAPWNQAPSF ADPMMFPYN

Arabidopsis Description

AGL93Agamous-like MADS-box protein AGL93 [Source:UniProtKB/Swiss-Prot;Acc:Q7X9H9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.