Factsheet for Bra037571.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009436.1-P
Bra009911.1-P
Bra020524.1-P
Bra020525.1-P
Bra020550.1-P
Bra020552.1-P
Bra020600.1-P
Bra027116.1-P
Bra040965.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18650.1	Bra009911.1-P	AT1G31640.1	15805477
AT3G18650.1	Bra020524.1-P	AT1G31640.1	15805477
AT3G18650.1	Bra020525.1-P	AT1G31640.1	15805477
AT3G18650.1	Bra020550.1-P	AT1G31640.1	15805477
AT3G18650.1	Bra020552.1-P	AT1G31640.1	15805477
AT3G18650.1	Bra009436.1-P	AT1G46408.1	15805477
AT3G18650.1	Bra020600.1-P	AT1G48150.1	15805477
AT3G18650.1	Bra027116.1-P	AT1G60880.1	15805477
AT3G18650.1	Bra040965.1-P	AT1G60880.1	15805477
AT3G18650.1	Bra027116.1-P	AT1G60920.1	15805477
AT3G18650.1	Bra040965.1-P	AT1G60920.1	15805477
AT3G18650.1	Bra009436.1-P	AT5G04640.1	15805477
AT3G18650.1	Bra020600.1-P	AT5G27130.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18534	Canola	mitochondrion, nucleus, plastid	70.18	97.56
Bra022341.1-P	Field mustard	plastid	48.83	45.38
AT3G18650.1	Thale cress	plastid	36.55	32.38
Bra031864.1-P	Field mustard	nucleus	22.81	23.57
Bra020923.1-P	Field mustard	nucleus	14.04	22.97
Bra007138.1-P	Field mustard	nucleus	17.84	21.71
Bra028019.1-P	Field mustard	nucleus	17.84	21.4
Bra025609.1-P	Field mustard	nucleus	19.88	20.24
Bra018741.1-P	Field mustard	nucleus	15.2	19.7
Bra025607.1-P	Field mustard	nucleus	19.59	19.2
Bra004071.1-P	Field mustard	nucleus	15.79	19.01
Bra025619.1-P	Field mustard	nucleus	19.88	18.53
Bra028020.1-P	Field mustard	nucleus	14.04	18.25
Bra018767.1-P	Field mustard	nucleus	16.08	17.97
Bra015129.1-P	Field mustard	nucleus	15.79	16.93
Bra007139.1-P	Field mustard	nucleus	7.02	14.12

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra037571	EnsemblPlants:Bra037571.1	EnsemblPlants:Bra037571.1-P	ncoils:Coil
GO:GO:0000982	GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M4F908
InterPro:MADS_SRF-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF350
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002544E7D	SEG:seg

Description

AT3G18650 (E=1e-036) agl103 | agl103 (AGAMOUS-LIKE 103); transcription factor

Coordinates

chrA01:+:22015987..22017015

Molecular Weight (calculated)

39173.3 Da

IEP (calculated)

9.439

GRAVY (calculated)

-0.775

Length

342 amino acids

Sequence
(BLAST)

001: MSSSLSKTTK VSQFRPTLFQ KASSLKAASL AKRQVTVFKK AEELSILCGV EVSVICYGSD GALRTWPKDR EKVKDMAVRY SQLSEVKRRI KQWDLNKFLE
101: EVNKDPKKKN KKKKVKLESS YKYPDWDPRF GNCSVEQLTE LIESLERKQT IMQDRLRAVL ESQRQRNMYY MNMAEPTQMN HLQQQLPNQD QSLAPLPNSL
201: TVYQYPNMDM YSSFLGGQET GRNEFLSTNM IPNNSFNSNC VYMFQNQFNQ NCSKVEDYSG FPQGTGINNM NVEDYSGSLR AQGPNGLQNM DLQGYNNNSI
301: NTNGFSHQLV QFPAQRAAPA CQYVDGSTQN IRPQFQYSSF VG

Best Arabidopsis Sequence Match ( AT3G18650.1 )
(BLAST)

001: MASSSSSSLS FSTSKKNKTF FKKPNSAFSS SRATSLIKRQ QTVFKKAKEL SILCDIDVCV ICYGSNGELK TWPEEREKVK AIARRYGELS ETKRRKGSVD
101: LHEFLEKMNK DDPEKEEKKK IKVRRVPKVK YPVWDPRFDN YSVEQLMGLV QSLERNLTRI QHRTCAVVEA QGQRRVQYTN MANQELMMAN TMNQLQQHSN
201: QVSMYLWNHG NGAFSQIPVS ALASNQTQSL APIPPELMIY PNSDAGNYSG SLGVQGTGIN GLQNMNMLTY NNINSVNDFS KQFDQNSRAE SYSSLLGVHE
301: DGNNEFENPN MSSRNNFNVQ DCAGLLGMQG AGTNGLQSMN MHDYSNNNSI NSNGLSHQYV QFPTYNSQHQ DRVFNLDQNG NNTRSL

Arabidopsis Description

AGL103Agamous-like MADS-box protein AGL103 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.