Factsheet for Bra025619.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra009436.1-P
Bra010027.1-P
Bra014217.1-P
Bra018296.1-P
Bra018727.1-P
Bra020600.1-P
Bra031864.1-P
Bra032347.1-P
Bra032767.1-P
Bra033467.1-P
Bra033492.1-P
Bra037434.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38740.1	Bra032347.1-P	AT1G29962.1	15805477
AT5G38740.1	Bra009436.1-P	AT1G46408.1	15805477
AT5G38740.1	Bra020600.1-P	AT1G48150.1	15805477
AT5G38740.1	Bra039723.1-P	AT4G14640.1	17360592
AT5G38740.1	Bra009436.1-P	AT5G04640.1	15805477
AT5G38740.1	Bra020600.1-P	AT5G27130.1	15805477
AT5G38740.1	Bra010027.1-P	AT5G38620.1	15805477
AT5G38740.1	Bra014217.1-P	AT5G38620.1	15805477
AT5G38740.1	Bra018727.1-P	AT5G38620.1	15805477
AT5G38740.1	Bra032767.1-P	AT5G38620.1	15805477
AT5G38740.1	Bra033492.1-P	AT5G38620.1	15805477
AT5G38740.1	Bra037434.1-P	AT5G38620.1	15805477
AT5G38740.1	Bra010027.1-P	AT5G49420.1	15805477
AT5G38740.1	Bra014217.1-P	AT5G49420.1	15805477
AT5G38740.1	Bra018727.1-P	AT5G49420.1	15805477
AT5G38740.1	Bra032767.1-P	AT5G49420.1	15805477
AT5G38740.1	Bra033492.1-P	AT5G49420.1	15805477
AT5G38740.1	Bra037434.1-P	AT5G49420.1	15805477
AT5G38740.1	Bra031864.1-P	AT5G65330.1	15805477
AT5G39810.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G39810.1	Bra000214.1-P	AT2G41100.1	17360592
AT5G39810.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G39810.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G39810.1	Bra039723.1-P	AT4G14640.1	17360592
AT5G39810.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G39810.1	Bra006595.1-P	AT5G21274.1	17360592
AT5G40120.1	Bra009436.1-P	AT1G46408.1	15805477
AT5G40120.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G40120.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G40120.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G40120.1	Bra009436.1-P	AT5G04640.1	15805477
AT5G40120.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G40120.1	Bra006595.1-P	AT5G21274.1	17360592
AT5G40120.1	Bra010027.1-P	AT5G49420.1	15805477
AT5G40120.1	Bra014217.1-P	AT5G49420.1	15805477
AT5G40120.1	Bra018727.1-P	AT5G49420.1	15805477
AT5G40120.1	Bra032767.1-P	AT5G49420.1	15805477
AT5G40120.1	Bra033492.1-P	AT5G49420.1	15805477
AT5G40120.1	Bra037434.1-P	AT5G49420.1	15805477
AT5G40220.1	Bra009436.1-P	AT1G46408.1	15805477
AT5G40220.1	Bra020600.1-P	AT1G48150.1	15805477
AT5G40220.1	Bra009436.1-P	AT5G04640.1	15805477
AT5G40220.1	Bra010027.1-P	AT5G38620.1	15805477
AT5G40220.1	Bra014217.1-P	AT5G38620.1	15805477
AT5G40220.1	Bra018727.1-P	AT5G38620.1	15805477
AT5G40220.1	Bra032767.1-P	AT5G38620.1	15805477
AT5G40220.1	Bra033492.1-P	AT5G38620.1	15805477
AT5G40220.1	Bra037434.1-P	AT5G38620.1	15805477
AT5G40220.1	Bra010027.1-P	AT5G49420.1	15805477
AT5G40220.1	Bra014217.1-P	AT5G49420.1	15805477
AT5G40220.1	Bra018727.1-P	AT5G49420.1	15805477
AT5G40220.1	Bra032767.1-P	AT5G49420.1	15805477
AT5G40220.1	Bra033492.1-P	AT5G49420.1	15805477
AT5G40220.1	Bra037434.1-P	AT5G49420.1	15805477
AT5G41200.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G41200.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G41200.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G41200.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G41200.1	Bra006595.1-P	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30838	Canola	nucleus	73.84	75.7
Bra025607.1-P	Field mustard	nucleus	71.66	75.36
Bra025609.1-P	Field mustard	nucleus	54.5	59.52
AT5G41200.1	Thale cress	nucleus, plastid	33.52	37.27
AT5G40220.1	Thale cress	nucleus	32.43	36.73
AT5G39750.1	Thale cress	nucleus	33.52	34.65
Bra031864.1-P	Field mustard	nucleus	30.25	33.53
AT5G40120.1	Thale cress	nucleus	33.79	32.21
AT5G39810.1	Thale cress	plastid	28.61	31.91
AT5G37415.1	Thale cress	nucleus	25.61	29.75
AT5G38740.1	Thale cress	nucleus	32.97	28.4
Bra004071.1-P	Field mustard	nucleus	17.71	22.89
Bra007138.1-P	Field mustard	nucleus	16.35	21.35
Bra028019.1-P	Field mustard	nucleus	16.35	21.05
Bra022341.1-P	Field mustard	plastid	20.98	20.92
Bra020923.1-P	Field mustard	nucleus	11.44	20.1
Bra037571.1-P	Field mustard	mitochondrion, nucleus, plastid	18.53	19.88
Bra028020.1-P	Field mustard	nucleus	13.9	19.39
Bra018741.1-P	Field mustard	nucleus	13.62	18.94
Bra018767.1-P	Field mustard	nucleus	12.26	14.71
Bra015129.1-P	Field mustard	nucleus	12.26	14.11
Bra007139.1-P	Field mustard	nucleus	5.18	11.18

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra025619	EnsemblPlants:Bra025619.1	EnsemblPlants:Bra025619.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
UniProt:M4EA12	PFAM:PF00319	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF350	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002544B56	SEG:seg	:	:

Description

AT4G11250 (E=2e-044) AGL52 | AGL52; transcription factor

Coordinates

chrA04:+:7465352..7466455

Molecular Weight (calculated)

42318.4 Da

IEP (calculated)

8.046

GRAVY (calculated)

-0.508

Length

367 amino acids

Sequence
(BLAST)

001: MRPPRPSPSS KCSSSSSSYS LAATSLNSRL LTVFKKAQEL TTLCDIEACV IHYGPDGELK TWPEDRDKVR SLALRYIQLD QDKRRKKSIN LYEFLNKMKD
101: KKKMINSFKK KAKRNVEELK YPISHHYSPY QINQLIQSLE LSYSTLQERR RFLAAKANLE DRQHSFNPSQ FTQESVLKNQ ELCVNVKNNN SFQHLCVSDY
201: STVQESALRY HSMLYGGTYD QNMMCMGNIN NVQHPWLSNA HPPELQEPNQ LMQHELNYGF DQNMLCMGDT TNSFSVVDPC LPNMLPDDFC FDFQDPYGGN
301: MVGNPSFSQV FFSRHVFKLC LWEPTTSGVY STISLAPTLL TKTLRFQAIY LMITESEAVY ASACFYF

Best Arabidopsis Sequence Match ( AT5G41200.1 )
(BLAST)

001: MTMRSSSPSS SSSYSLAFTS LSNRLETIFK KASELCTLCD IEACVIYYGP DGELKTWPKE KEKVRDIALR YSLLNEALRR KKSVNLHGFL NKKKNKGLKN
101: PNKKMKTSLK NVNILKYPLA DHYPPDQVSP LIQSLELHVS KFQERLRFLE SQKQNQTKPD HQSLTPSSLN HYTQSLNPSQ FSLFMYNHGD NTLSQIPVSA
201: SNFNQDYFSA LLEESELKNQ LMKPEICGYD QNQNMSMGDI TNNKFQDPCV SNKEAVQESV NNFGLNQLMY KEFYGCDQNM SMGNINSNSF QNPCVSNTQH
301: YSAVEESVKN PWLNQLMQNE LYGYGYAGFC

Arabidopsis Description

AGL75Agamous-like MADS-box protein AGL75 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLL0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.