Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025619.1-P | Field mustard | nucleus | 75.7 | 73.84 |
| CDY44595 | Canola | nucleus | 64.8 | 72.73 |
| CDY68883 | Canola | nucleus | 58.94 | 71.04 |
| CDY36823 | Canola | nucleus | 55.59 | 65.25 |
| CDY65583 | Canola | plastid | 50.84 | 63.41 |
| CDY44599 | Canola | nucleus | 59.22 | 63.1 |
| CDY44597 | Canola | nucleus | 40.5 | 61.18 |
| CDY36817 | Canola | plastid | 47.49 | 58.22 |
| AT5G41200.1 | Thale cress | nucleus, plastid | 34.64 | 37.58 |
| AT5G40220.1 | Thale cress | nucleus | 33.52 | 37.04 |
| CDY37821 | Canola | nucleus | 27.65 | 35.87 |
| CDY33964 | Canola | nucleus | 28.77 | 35.64 |
| AT5G39750.1 | Thale cress | nucleus | 34.36 | 34.65 |
| AT5G40120.1 | Thale cress | nucleus | 35.75 | 33.25 |
| CDY63010 | Canola | plastid | 5.59 | 32.26 |
| AT5G39810.1 | Thale cress | plastid | 29.05 | 31.61 |
| AT5G37415.1 | Thale cress | nucleus | 26.82 | 30.38 |
| AT5G38740.1 | Thale cress | nucleus | 34.92 | 29.34 |
| CDY18534 | Canola | mitochondrion, nucleus, plastid | 17.88 | 26.02 |
| CDY63012 | Canola | cytosol | 12.57 | 22.5 |
| CDX93682 | Canola | nucleus | 15.08 | 22.31 |
| CDX99332 | Canola | plastid | 21.23 | 21.35 |
| CDX93744 | Canola | nucleus | 16.76 | 21.05 |
| CDX73406 | Canola | plastid | 16.48 | 20.92 |
| CDX92256 | Canola | plastid | 21.51 | 20.81 |
| CDY40199 | Canola | nucleus | 15.08 | 20.69 |
| CDX93743 | Canola | nucleus | 14.8 | 20.15 |
| CDX73409 | Canola | nucleus | 12.85 | 20.0 |
| CDX93708 | Canola | nucleus | 15.08 | 19.57 |
| CDX95509 | Canola | plastid | 15.36 | 19.03 |
| CDY56522 | Canola | nucleus | 11.73 | 18.03 |
| CDY18533 | Canola | nucleus | 3.63 | 17.81 |
| CDY28851 | Canola | nucleus | 13.69 | 17.25 |
| CDY27890 | Canola | nucleus | 15.08 | 16.93 |
| CDY40595 | Canola | cytosol, golgi, vacuole | 15.08 | 15.88 |
| CDY67867 | Canola | mitochondrion | 17.32 | 14.69 |
| CDX75976 | Canola | mitochondrion, nucleus | 3.35 | 5.91 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078H1Y5 | UniProt:A0A078H1Y5 | EnsemblPlants:CDY30838 | ProteinID:CDY30838 |
| ProteinID:CDY30838.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00046305001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PFscan:PS50066 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF350 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EEDBAE |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g26930DBnaC04g26930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H1Y5]
Coordinates
chrLK032262:-:17759..18835
Molecular Weight (calculated)
41158.1 Da
IEP (calculated)
6.288
GRAVY (calculated)
-0.768
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSPRPSSCS KYSSASSSSS SYSFAATSLN SRLLTIFKKA QELTTLCDIE ACVIHYGPDG ELKTWPEDRD KVRDLALRYI QLDEAKRRKK NVNLHEFLNK
101: MEDKKTMLQK FKKRAKKNVE ELKYPISDHY SPGQINQLIH SLELSYSKLQ ERRRFLAAKA NLEDRQHSFI PSHFTQESVL KNQELYVNDK NNNSFQHLCV
201: SDYSAVQESA LRYHSMLYGG TYDQNMMCMG NSNNVQHPWL SNAHPTELQE PNQLMQRELN YGFDQNMCMS DTTNSFSVVD PCLPNMLPDD FCFDFQDPYG
301: GNMVGNPSFS QDFFPDMSSS YVYGSRLLQE STLPSLSSSN ITNENSEIPS NLPDDHRE
101: MEDKKTMLQK FKKRAKKNVE ELKYPISDHY SPGQINQLIH SLELSYSKLQ ERRRFLAAKA NLEDRQHSFI PSHFTQESVL KNQELYVNDK NNNSFQHLCV
201: SDYSAVQESA LRYHSMLYGG TYDQNMMCMG NSNNVQHPWL SNAHPTELQE PNQLMQRELN YGFDQNMCMS DTTNSFSVVD PCLPNMLPDD FCFDFQDPYG
301: GNMVGNPSFS QDFFPDMSSS YVYGSRLLQE STLPSLSSSN ITNENSEIPS NLPDDHRE
001: MTMRSLPFSS SSYSLASTSL SNRLETIFKK ASELCTLCDI EACVIYYGPD GELKTWPKEK EKVRDIALRY SQLNEALRSK KSVNLHGFLN KKKKKKKKGL
101: KNPNNKRKTC LKKNVNVLKY PLADHYPPDQ VSQLTQSLKL HVSKFQERLR FLESQKQTKP DHQSLTPSSL NHQTQSLNPR QFSLFMYNHG DNTLSQISVS
201: ASNFNQNYFS ALLEQSELKN QLMKQDGYDQ NQNMRMGDIT NNNFQLPYFS KKEAVQESVN YFGMNQLMLK ELYGCDQNMC MGNINSNSFQ HPCVSKAQHY
301: SAVEGSVNNQ RQSELMQQEL CGYEQNMCFT NNNFQVSNKE AVQESVTNFG LMQHELYGCD QNMSMGNIIN NSFQQRLKHR TRICE
101: KNPNNKRKTC LKKNVNVLKY PLADHYPPDQ VSQLTQSLKL HVSKFQERLR FLESQKQTKP DHQSLTPSSL NHQTQSLNPR QFSLFMYNHG DNTLSQISVS
201: ASNFNQNYFS ALLEQSELKN QLMKQDGYDQ NQNMRMGDIT NNNFQLPYFS KKEAVQESVN YFGMNQLMLK ELYGCDQNMC MGNINSNSFQ HPCVSKAQHY
301: SAVEGSVNNQ RQSELMQQEL CGYEQNMCFT NNNFQVSNKE AVQESVTNFG LMQHELYGCD QNMSMGNIIN NSFQQRLKHR TRICE
Arabidopsis Description
AGL76AGAMOUS-like 76 [Source:UniProtKB/TrEMBL;Acc:Q9FL19]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.