Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028020.1-P | Field mustard | nucleus | 86.09 | 75.29 |
| CDX93743 | Canola | nucleus | 83.91 | 73.38 |
| CDY40199 | Canola | nucleus | 70.0 | 61.69 |
| CDX73406 | Canola | plastid | 56.09 | 45.74 |
| CDX93744 | Canola | nucleus | 55.65 | 44.91 |
| AT5G26865.1 | Thale cress | nucleus | 17.83 | 32.54 |
| AT5G27050.1 | Thale cress | nucleus | 15.65 | 30.0 |
| AT5G27580.1 | Thale cress | nucleus | 26.52 | 27.35 |
| AT5G27944.1 | Thale cress | nucleus | 25.65 | 26.34 |
| CDX93708 | Canola | nucleus | 29.13 | 24.28 |
| CDY63010 | Canola | plastid | 6.52 | 24.19 |
| AT5G26950.1 | Thale cress | nucleus | 28.26 | 22.49 |
| CDY63012 | Canola | cytosol | 19.13 | 22.0 |
| AT5G27070.1 | Thale cress | nucleus | 27.39 | 21.95 |
| AT5G27090.1 | Thale cress | nucleus, plastid | 17.83 | 21.93 |
| CDY56522 | Canola | nucleus | 22.17 | 21.89 |
| CDX93682 | Canola | nucleus | 22.61 | 21.49 |
| CDY27890 | Canola | nucleus | 28.7 | 20.69 |
| CDY40595 | Canola | cytosol, golgi, vacuole | 26.96 | 18.24 |
| CDX95509 | Canola | plastid | 22.17 | 17.65 |
| CDY18534 | Canola | mitochondrion, nucleus, plastid | 16.96 | 15.85 |
| CDY28851 | Canola | nucleus | 17.83 | 14.44 |
| CDY44595 | Canola | nucleus | 20.0 | 14.42 |
| CDY36817 | Canola | plastid | 17.83 | 14.04 |
| CDY65583 | Canola | plastid | 16.96 | 13.59 |
| CDX99332 | Canola | plastid | 20.43 | 13.2 |
| CDY30838 | Canola | nucleus | 20.0 | 12.85 |
| CDY68883 | Canola | nucleus | 16.52 | 12.79 |
| CDY36823 | Canola | nucleus | 16.96 | 12.79 |
| CDY44599 | Canola | nucleus | 18.26 | 12.5 |
| CDY33964 | Canola | nucleus | 15.65 | 12.46 |
| CDX92256 | Canola | plastid | 20.0 | 12.43 |
| CDY18533 | Canola | nucleus | 3.91 | 12.33 |
| CDY37821 | Canola | nucleus | 14.78 | 12.32 |
| CDY44597 | Canola | nucleus | 10.0 | 9.7 |
| CDY67867 | Canola | mitochondrion | 16.96 | 9.24 |
| CDX75976 | Canola | mitochondrion, nucleus | 7.83 | 8.87 |
Protein Annotations
| EnsemblPlants:CDX73409 | EnsemblPlantsGene:GSBRNA2T00108894001 | Gene3D:3.40.1810.10 | GO:A0A078CB19 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | PFAM:PF00319 | PFscan:PS50066 | ProteinID:CDX73409 | ProteinID:CDX73409.1 |
| SUPFAM:SSF55455 | UniParc:UPI0004EF4C1B | MapMan:15.5.14 | : | : | : |
Description
BnaC08g25940D
Coordinates
chrLK031799:-:199014..199883
Molecular Weight (calculated)
26117.2 Da
IEP (calculated)
5.069
GRAVY (calculated)
-0.715
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MRQETILRKA GELSTLCDNE ICVIHYDRVG NLVRTWPEDE SQVQKMHDEK KRSPIEFSQK VQELEGSLVS KLQLLRDMML REDHRIESST NLLRNGSTST
101: EQDLSRGDVY NSTATGSFNH QSKYSIFMFN HENATLSQLP HSISSSLEQS LIPSYYNNLN DHRALLGAQG FNDNNNLSTT QGFFNFGYDN NALPGEQVNF
201: GYYNSLLGTQ GFGGYDNNLN YTQGFNNLCT
101: EQDLSRGDVY NSTATGSFNH QSKYSIFMFN HENATLSQLP HSISSSLEQS LIPSYYNNLN DHRALLGAQG FNDNNNLSTT QGFFNFGYDN NALPGEQVNF
201: GYYNSLLGTQ GFGGYDNNLN YTQGFNNLCT
001: MDSSTSTKKN TKLFVRNQTC FKKSSLSSSN AKKTTNLSMR EQTMFKKALE LSTLCDIEVC VIYYGRDGKL IKTWPEDQSK ILHDKKLSEK VLEMEDSLES
101: GLRVLQDKLL LLQPEKNQTE LGQSCAVYST TYPLSSPSLI EDHQHQQQWT EPLSNTE
101: GLRVLQDKLL LLQPEKNQTE LGQSCAVYST TYPLSSPSLI EDHQHQQQWT EPLSNTE
Arabidopsis Description
AGL54AGAMOUS-like 54 [Source:UniProtKB/TrEMBL;Acc:Q9S9U2]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.