Subcellular Localization
min:
: max
Winner_takes_all: golgi, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- vacuole 2
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 1
- golgi 2
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY63010 | Canola | plastid | 15.29 | 83.87 |
| CDX93682 | Canola | nucleus | 49.12 | 69.01 |
| CDX93708 | Canola | nucleus | 52.06 | 64.13 |
| CDY63012 | Canola | cytosol | 35.88 | 61.0 |
| CDY27890 | Canola | nucleus | 52.35 | 55.8 |
| AT5G26865.1 | Thale cress | nucleus | 15.0 | 40.48 |
| AT5G27050.1 | Thale cress | nucleus | 13.53 | 38.33 |
| CDX73406 | Canola | plastid | 27.06 | 32.62 |
| CDX93744 | Canola | nucleus | 26.76 | 31.93 |
| CDY40199 | Canola | nucleus | 23.82 | 31.03 |
| AT5G27944.1 | Thale cress | nucleus | 20.29 | 30.8 |
| CDX93743 | Canola | nucleus | 23.82 | 30.8 |
| AT5G27580.1 | Thale cress | nucleus | 19.12 | 29.15 |
| AT5G27090.1 | Thale cress | nucleus, plastid | 15.88 | 28.88 |
| CDX73409 | Canola | nucleus | 18.24 | 26.96 |
| AT5G27070.1 | Thale cress | nucleus | 22.06 | 26.13 |
| AT5G26950.1 | Thale cress | nucleus | 20.88 | 24.57 |
| CDY18534 | Canola | mitochondrion, nucleus, plastid | 14.71 | 20.33 |
| CDY56522 | Canola | nucleus | 13.82 | 20.17 |
| CDY28851 | Canola | nucleus | 15.59 | 18.66 |
| CDY18533 | Canola | nucleus | 3.82 | 17.81 |
| CDY36817 | Canola | plastid | 14.12 | 16.44 |
| CDY65583 | Canola | plastid | 13.82 | 16.38 |
| CDX99332 | Canola | plastid | 16.76 | 16.01 |
| CDX95509 | Canola | plastid | 13.53 | 15.92 |
| CDY36823 | Canola | nucleus | 14.12 | 15.74 |
| CDY67867 | Canola | mitochondrion | 19.12 | 15.4 |
| CDX92256 | Canola | plastid | 16.47 | 15.14 |
| CDY30838 | Canola | nucleus | 15.88 | 15.08 |
| CDY33964 | Canola | nucleus | 12.65 | 14.88 |
| CDY37821 | Canola | nucleus | 12.06 | 14.86 |
| CDY68883 | Canola | nucleus | 12.94 | 14.81 |
| CDY44599 | Canola | nucleus | 14.12 | 14.29 |
| CDY44595 | Canola | nucleus | 13.24 | 14.11 |
| CDX75976 | Canola | mitochondrion, nucleus | 3.53 | 5.91 |
| CDY44597 | Canola | nucleus | 3.82 | 5.49 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078HPX2 | UniProt:A0A078HPX2 | EnsemblPlants:CDY40595 | ProteinID:CDY40595 |
| ProteinID:CDY40595.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00071428001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 |
| PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF350 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | TMHMM:TMhelix | UniParc:UPI0004EF014B | SEG:seg | : | : |
Description
BnaC06g02110DBnaC06g02110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPX2]
Coordinates
chrLK032475:-:32852..34199
Molecular Weight (calculated)
39445.4 Da
IEP (calculated)
9.058
GRAVY (calculated)
-0.252
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MVCQIDTYIY FKISKEKYCL SNIIYIHIYL SYVIYDIYII LFIKIENYKH KYIINDPLKL FSISAIVLCH SLYIFSIFFY NMFLSSVISY GLITHNSFLT
101: LRKLSKKLLF CFCHGFSSSS STSTKMKNNN KLSVRNQTRF KKSFLLLREK TILKKALELS ILCDNDICVI HYDREGNLVN AYPEDQSQVK DILQRYNNLS
201: DREKIKKNTN LSQFYNKKLV DEKRRSLTDA EERKRFTKKV GAFKGSLEDK LQIVKDRVRD LLYSQDHQTE PDQSPCLDVI GDHVSASSDQ YLLGPASCAT
301: DASNHESKFS VFLFNHETAT FTQLPNSASS SFDQGLIGTY
101: LRKLSKKLLF CFCHGFSSSS STSTKMKNNN KLSVRNQTRF KKSFLLLREK TILKKALELS ILCDNDICVI HYDREGNLVN AYPEDQSQVK DILQRYNNLS
201: DREKIKKNTN LSQFYNKKLV DEKRRSLTDA EERKRFTKKV GAFKGSLEDK LQIVKDRVRD LLYSQDHQTE PDQSPCLDVI GDHVSASSDQ YLLGPASCAT
301: DASNHESKFS VFLFNHETAT FTQLPNSASS SFDQGLIGTY
001: MDSSMSTKKK TKLSVRNQTC FKKSSLSSSS TAKKTTNLSM REETMFKKAL ELSTLCDIEV CVIYYGRDGE LIKTWPEDQS KVRDMAERFS KLHERERRKK
101: RTNLSLFLRK KILDDNKLSE KVLEMKDSLE SGLRVLQDKL LLLQPENQTE LGQSRAVSST TNPLSSPEDH HHQQWTEPLV TGVSNTEQDL STSPLSNHQS
201: KYSVFVYNHD SGSFYQVPDS ICF
101: RTNLSLFLRK KILDDNKLSE KVLEMKDSLE SGLRVLQDKL LLLQPENQTE LGQSRAVSST TNPLSSPEDH HHQQWTEPLV TGVSNTEQDL STSPLSNHQS
201: KYSVFVYNHD SGSFYQVPDS ICF
Arabidopsis Description
AGL89AGAMOUS-like 89 [Source:UniProtKB/TrEMBL;Acc:Q7XJL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.