CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70208
CDX80577
CDX88231
CDY05333
CDY05514
CDY05515
CDY12872
CDY25046
CDY40477
CDY44873
CDY50584
CDY54756
CDY67043
CDY70782
CDY71564
CDY71896

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18650.1	CDX80577	AT1G31640.1	15805477
AT3G18650.1	CDX88231	AT1G31640.1	15805477
AT3G18650.1	CDY05333	AT1G31640.1	15805477
AT3G18650.1	CDY05514	AT1G31640.1	15805477
AT3G18650.1	CDY05515	AT1G31640.1	15805477
AT3G18650.1	CDY67043	AT1G31640.1	15805477
AT3G18650.1	CDY70782	AT1G31640.1	15805477
AT3G18650.1	CDY71564	AT1G31640.1	15805477
AT3G18650.1	CDY71896	AT1G31640.1	15805477
AT3G18650.1	CDX70208	AT1G46408.1	15805477
AT3G18650.1	CDY44873	AT1G46408.1	15805477
AT3G18650.1	CDY25046	AT1G48150.1	15805477
AT3G18650.1	CDY50584	AT1G48150.1	15805477
AT3G18650.1	CDY12872	AT1G60880.1	15805477
AT3G18650.1	CDY40477	AT1G60880.1	15805477
AT3G18650.1	CDY54756	AT1G60880.1	15805477
AT3G18650.1	CDY12872	AT1G60920.1	15805477
AT3G18650.1	CDY40477	AT1G60920.1	15805477
AT3G18650.1	CDY54756	AT1G60920.1	15805477
AT3G18650.1	CDX70208	AT5G04640.1	15805477
AT3G18650.1	CDY44873	AT5G04640.1	15805477
AT3G18650.1	CDY25046	AT5G27130.1	15805477
AT3G18650.1	CDY50584	AT5G27130.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022341.1-P	Field mustard	plastid	98.11	98.64
CDX99332	Canola	plastid	72.43	75.28
CDY18534	Canola	mitochondrion, nucleus, plastid	43.78	65.85
CDX95509	Canola	plastid	37.03	47.4
CDX75976	Canola	mitochondrion, nucleus	23.51	42.86
AT3G18650.1	Thale cress	plastid	42.43	40.67
CDY63010	Canola	plastid	5.14	30.65
CDY65583	Canola	plastid	20.81	26.83
CDY36823	Canola	nucleus	20.81	25.25
CDY44595	Canola	nucleus	21.62	25.08
CDY68883	Canola	nucleus	20.0	24.92
CDY36817	Canola	plastid	19.46	24.66
CDY44599	Canola	nucleus	22.16	24.4
CDX73406	Canola	plastid	18.38	24.11
CDY37821	Canola	nucleus	17.84	23.91
CDX93744	Canola	nucleus	18.38	23.86
CDY63012	Canola	cytosol	12.43	23.0
CDX93682	Canola	nucleus	14.59	22.31
CDY33964	Canola	nucleus	17.3	22.15
CDX93708	Canola	nucleus	16.49	22.1
CDY30838	Canola	nucleus	20.81	21.51
CDY40199	Canola	nucleus	15.14	21.46
CDX73409	Canola	nucleus	12.43	20.0
CDX93743	Canola	nucleus	14.05	19.77
CDY27890	Canola	nucleus	17.03	19.75
CDY28851	Canola	nucleus	15.14	19.72
CDY56522	Canola	nucleus	11.62	18.45
CDY40595	Canola	cytosol, golgi, vacuole	15.14	16.47
CDY67867	Canola	mitochondrion	18.38	16.11
CDY44597	Canola	nucleus	8.38	13.08
CDY18533	Canola	nucleus	2.43	12.33

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078DSK5	EnsemblPlants:CDX92256	ProteinID:CDX92256	ProteinID:CDX92256.1
ncoils:Coil	GO:GO:0000982	GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00153974001	InterPro:IPR002100
InterPro:IPR036879	InterPro:MADS_SRF-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF350	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0004EDC323
SEG:seg	:	:	:	:	:

Description

BnaA05g21510D

Coordinates

chrLK031871:-:1108469..1109581

Molecular Weight (calculated)

42369.9 Da

IEP (calculated)

9.287

GRAVY (calculated)

-0.892

Length

370 amino acids

Sequence
(BLAST)

001: MSSSSLACLP SSSSSQIRQN HFQKTSSLKA TSLAKRQVTV FKKARELSIL CGIEVCVIYY GSEGELKTWP KDREKVKDMA RRYSQLSDMK RRKGQDDLDK
101: FLKKINKEDS KKKKKMKKVK VESSCKYPDW DPRFDNCSVE QLTELIQSLE HSETKLQHRL RGAVESQRQR NMYYTTMTGQ EQMNHLQQHS NQVSMDQYNH
201: GTGTLPQLPV STSGFNQSQS LAPLPNSLTI HQNPNMESYS RLLGVQETGI NEFLSMNMLP YNNNNINTNN VNVFPNQFHQ NSYNMEDYSG FLGVQETGIN
301: NMSSEDYSGL LWTQGTGING LQNMDMFGYN NNSNNNAYGF SHHQPVQYPG QRAPLGFQYM DRSTQNIRPL

Best Arabidopsis Sequence Match ( AT3G18650.1 )
(BLAST)

001: MASSSSSSLS FSTSKKNKTF FKKPNSAFSS SRATSLIKRQ QTVFKKAKEL SILCDIDVCV ICYGSNGELK TWPEEREKVK AIARRYGELS ETKRRKGSVD
101: LHEFLEKMNK DDPEKEEKKK IKVRRVPKVK YPVWDPRFDN YSVEQLMGLV QSLERNLTRI QHRTCAVVEA QGQRRVQYTN MANQELMMAN TMNQLQQHSN
201: QVSMYLWNHG NGAFSQIPVS ALASNQTQSL APIPPELMIY PNSDAGNYSG SLGVQGTGIN GLQNMNMLTY NNINSVNDFS KQFDQNSRAE SYSSLLGVHE
301: DGNNEFENPN MSSRNNFNVQ DCAGLLGMQG AGTNGLQSMN MHDYSNNNSI NSNGLSHQYV QFPTYNSQHQ DRVFNLDQNG NNTRSL

Arabidopsis Description

AGL103Agamous-like MADS-box protein AGL103 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.