Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018767.1-P | Field mustard | nucleus | 98.19 | 88.56 |
| CDY63010 | Canola | plastid | 18.84 | 83.87 |
| CDY27890 | Canola | nucleus | 89.13 | 77.12 |
| CDX93682 | Canola | nucleus | 54.71 | 62.4 |
| CDY63012 | Canola | cytosol | 42.39 | 58.5 |
| CDY40595 | Canola | cytosol, golgi, vacuole | 64.13 | 52.06 |
| AT5G26865.1 | Thale cress | nucleus | 18.84 | 41.27 |
| AT5G27050.1 | Thale cress | nucleus | 16.67 | 38.33 |
| CDX73406 | Canola | plastid | 35.14 | 34.4 |
| CDX93743 | Canola | nucleus | 32.25 | 33.84 |
| CDX93744 | Canola | nucleus | 34.06 | 32.98 |
| CDY40199 | Canola | nucleus | 31.16 | 32.95 |
| AT5G27944.1 | Thale cress | nucleus | 25.72 | 31.7 |
| AT5G27090.1 | Thale cress | nucleus, plastid | 20.65 | 30.48 |
| AT5G27580.1 | Thale cress | nucleus | 24.28 | 30.04 |
| CDX73409 | Canola | nucleus | 24.28 | 29.13 |
| AT5G27070.1 | Thale cress | nucleus | 27.17 | 26.13 |
| AT5G26950.1 | Thale cress | nucleus | 27.17 | 25.95 |
| CDY18534 | Canola | mitochondrion, nucleus, plastid | 18.48 | 20.73 |
| CDY56522 | Canola | nucleus | 17.39 | 20.6 |
| CDY28851 | Canola | nucleus | 21.01 | 20.42 |
| CDX95509 | Canola | plastid | 18.84 | 17.99 |
| CDY18533 | Canola | nucleus | 4.71 | 17.81 |
| CDY36817 | Canola | plastid | 18.48 | 17.47 |
| CDY65583 | Canola | plastid | 18.12 | 17.42 |
| CDX99332 | Canola | plastid | 22.46 | 17.42 |
| CDX92256 | Canola | plastid | 22.1 | 16.49 |
| CDY67867 | Canola | mitochondrion | 24.64 | 16.11 |
| CDY68883 | Canola | nucleus | 16.67 | 15.49 |
| CDY36823 | Canola | nucleus | 17.03 | 15.41 |
| CDY44599 | Canola | nucleus | 18.48 | 15.18 |
| CDY30838 | Canola | nucleus | 19.57 | 15.08 |
| CDY44595 | Canola | nucleus | 17.03 | 14.73 |
| CDY37821 | Canola | nucleus | 14.49 | 14.49 |
| CDY33964 | Canola | nucleus | 14.86 | 14.19 |
| CDX75976 | Canola | mitochondrion, nucleus | 4.71 | 6.4 |
| CDY44597 | Canola | nucleus | 5.43 | 6.33 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078E2I8 | EnsemblPlants:CDX93708 | ProteinID:CDX93708 | ProteinID:CDX93708.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00156405001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF350 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EF0845 |
Description
BnaA06g03400D
Coordinates
chrLK031876:-:1476387..1477307
Molecular Weight (calculated)
31378.0 Da
IEP (calculated)
8.639
GRAVY (calculated)
-0.691
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSLSSSTST RMKNNNKLSV RNQTRFKKSF LLLREKTILK KALELSILCD NDICVIHYDR EGNLVNTYPE DQCQVKHIVE RYRNLRDGEK IKKNTNLSQF
101: YNKKLVDEKR RSLTDAEERK RFTKKVGEFK SSLEHKLQIV KDRVRDLLYS QDHQTEPDQS TCLDDPLMNF CPQVINNPVS VHQQQIGSSL TNLLMSGDAS
201: GSSNDRSKFS IFLFNHETAT FTPLPNSVSS SFDQGLTPCS NNLITASHGA QGFNFGCSNN LNTQGFNFGC NNNLCT
101: YNKKLVDEKR RSLTDAEERK RFTKKVGEFK SSLEHKLQIV KDRVRDLLYS QDHQTEPDQS TCLDDPLMNF CPQVINNPVS VHQQQIGSSL TNLLMSGDAS
201: GSSNDRSKFS IFLFNHETAT FTPLPNSVSS SFDQGLTPCS NNLITASHGA QGFNFGCSNN LNTQGFNFGC NNNLCT
001: MDSSMSTKKK TKLSVRNQTC FKKSSLSSSS TAKKTTNLSM REQTMFKKAL ELSTLCNIDV CVIYYGRDGK LIKTWPEDQS KVRDMAERFS RLHERERCKK
101: RTNLSLFLRK KILDDTKLSE KVLEMEDSLE SGLRVLQDKL LLLQPEKNQT EFGQTRAVSS TTNPLSPPPS LIEDHRHQQW TEPLMSGVSN TEQDLSTSSL
201: SQNQSRISVF LYNHDNRSFY QVPDSVSSFD QSALLGEQGS GLGSNFDLPP MVFPPQMQTQ TPLVPFDQFA AWNQAPSFAD PMMFPYN
101: RTNLSLFLRK KILDDTKLSE KVLEMEDSLE SGLRVLQDKL LLLQPEKNQT EFGQTRAVSS TTNPLSPPPS LIEDHRHQQW TEPLMSGVSN TEQDLSTSSL
201: SQNQSRISVF LYNHDNRSFY QVPDSVSSFD QSALLGEQGS GLGSNFDLPP MVFPPQMQTQ TPLVPFDQFA AWNQAPSFAD PMMFPYN
Arabidopsis Description
AGL53Agamous-like MADS-box protein AGL53 [Source:UniProtKB/Swiss-Prot;Acc:Q7X9N2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.