CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70208
CDX74754
CDX77232
CDX80577
CDX85396
CDX85418
CDX86226
CDX86252
CDX88231
CDX93668
CDY01199
CDY05333
CDY05514
CDY05515
CDY12741
CDY12757
CDY12872
CDY16511
CDY16529
CDY18911
CDY18912
CDY25046
CDY28103
CDY30838
CDY32839
CDY36817
CDY36823
CDY40477
CDY44595
CDY44597
CDY44599
CDY44873
CDY46277
CDY49671
CDY50510
CDY50584
CDY53885
CDY54756
CDY60686
CDY65583
CDY67043
CDY67845
CDY68883
CDY70782
CDY71564
CDY71896

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11250.1	CDX70208	AT1G46408.1	15805477
AT4G11250.1	CDY44873	AT1G46408.1	15805477
AT4G11250.1	CDY25046	AT1G48150.1	15805477
AT4G11250.1	CDY50584	AT1G48150.1	15805477
AT4G11250.1	CDY12872	AT1G60880.1	15805477
AT4G11250.1	CDY40477	AT1G60880.1	15805477
AT4G11250.1	CDY54756	AT1G60880.1	15805477
AT4G11250.1	CDY12872	AT1G60920.1	15805477
AT4G11250.1	CDY40477	AT1G60920.1	15805477
AT4G11250.1	CDY54756	AT1G60920.1	15805477
AT4G11250.1	CDX70208	AT5G04640.1	15805477
AT4G11250.1	CDY44873	AT5G04640.1	15805477
AT4G11250.1	CDY25046	AT5G27130.1	15805477
AT4G11250.1	CDY50584	AT5G27130.1	15805477
AT4G11250.1	CDX77232	AT5G38620.1	15805477
AT4G11250.1	CDX85396	AT5G38620.1	15805477
AT4G11250.1	CDX85418	AT5G38620.1	15805477
AT4G11250.1	CDX86226	AT5G38620.1	15805477
AT4G11250.1	CDX86252	AT5G38620.1	15805477
AT4G11250.1	CDX93668	AT5G38620.1	15805477
AT4G11250.1	CDY01199	AT5G38620.1	15805477
AT4G11250.1	CDY12741	AT5G38620.1	15805477
AT4G11250.1	CDY12757	AT5G38620.1	15805477
AT4G11250.1	CDY16511	AT5G38620.1	15805477
AT4G11250.1	CDY16529	AT5G38620.1	15805477
AT4G11250.1	CDY28103	AT5G38620.1	15805477
AT4G11250.1	CDY32839	AT5G38620.1	15805477
AT4G11250.1	CDY46277	AT5G38620.1	15805477
AT4G11250.1	CDY49671	AT5G38620.1	15805477
AT4G11250.1	CDY50510	AT5G38620.1	15805477
AT4G11250.1	CDY67845	AT5G38620.1	15805477
AT4G11250.1	CDX77232	AT5G49420.1	15805477
AT4G11250.1	CDX85396	AT5G49420.1	15805477
AT4G11250.1	CDX85418	AT5G49420.1	15805477
AT4G11250.1	CDX86226	AT5G49420.1	15805477
AT4G11250.1	CDX86252	AT5G49420.1	15805477
AT4G11250.1	CDX93668	AT5G49420.1	15805477
AT4G11250.1	CDY01199	AT5G49420.1	15805477
AT4G11250.1	CDY12741	AT5G49420.1	15805477
AT4G11250.1	CDY12757	AT5G49420.1	15805477
AT4G11250.1	CDY16511	AT5G49420.1	15805477
AT4G11250.1	CDY16529	AT5G49420.1	15805477
AT4G11250.1	CDY28103	AT5G49420.1	15805477
AT4G11250.1	CDY32839	AT5G49420.1	15805477
AT4G11250.1	CDY46277	AT5G49420.1	15805477
AT4G11250.1	CDY49671	AT5G49420.1	15805477
AT4G11250.1	CDY50510	AT5G49420.1	15805477
AT4G11250.1	CDY67845	AT5G49420.1	15805477
AT5G65330.1	CDX80577	AT1G31640.1	15805477
AT5G65330.1	CDX88231	AT1G31640.1	15805477
AT5G65330.1	CDY05333	AT1G31640.1	15805477
AT5G65330.1	CDY05514	AT1G31640.1	15805477
AT5G65330.1	CDY05515	AT1G31640.1	15805477
AT5G65330.1	CDY67043	AT1G31640.1	15805477
AT5G65330.1	CDY70782	AT1G31640.1	15805477
AT5G65330.1	CDY71564	AT1G31640.1	15805477
AT5G65330.1	CDY71896	AT1G31640.1	15805477
AT5G65330.1	CDX70208	AT1G46408.1	15805477
AT5G65330.1	CDY44873	AT1G46408.1	15805477
AT5G65330.1	CDY25046	AT1G48150.1	15805477
AT5G65330.1	CDY50584	AT1G48150.1	15805477
AT5G65330.1	CDY12872	AT1G60880.1	15805477
AT5G65330.1	CDY40477	AT1G60880.1	15805477
AT5G65330.1	CDY54756	AT1G60880.1	15805477
AT5G65330.1	CDY12872	AT1G60920.1	15805477
AT5G65330.1	CDY40477	AT1G60920.1	15805477
AT5G65330.1	CDY54756	AT1G60920.1	15805477
AT5G65330.1	CDX74754	AT2G45650.1	15805477
AT5G65330.1	CDY18911	AT2G45650.1	15805477
AT5G65330.1	CDY18912	AT2G45650.1	15805477
AT5G65330.1	CDY53885	AT2G45650.1	15805477
AT5G65330.1	CDY60686	AT2G45650.1	15805477
AT5G65330.1	CDX70208	AT5G04640.1	15805477
AT5G65330.1	CDY44873	AT5G04640.1	15805477
AT5G65330.1	CDY25046	AT5G27130.1	15805477
AT5G65330.1	CDY50584	AT5G27130.1	15805477
AT5G65330.1	CDX77232	AT5G38620.1	15805477
AT5G65330.1	CDX85396	AT5G38620.1	15805477
AT5G65330.1	CDX85418	AT5G38620.1	15805477
AT5G65330.1	CDX86226	AT5G38620.1	15805477
AT5G65330.1	CDX86252	AT5G38620.1	15805477
AT5G65330.1	CDX93668	AT5G38620.1	15805477
AT5G65330.1	CDY01199	AT5G38620.1	15805477
AT5G65330.1	CDY12741	AT5G38620.1	15805477
AT5G65330.1	CDY12757	AT5G38620.1	15805477
AT5G65330.1	CDY16511	AT5G38620.1	15805477
AT5G65330.1	CDY16529	AT5G38620.1	15805477
AT5G65330.1	CDY28103	AT5G38620.1	15805477
AT5G65330.1	CDY32839	AT5G38620.1	15805477
AT5G65330.1	CDY46277	AT5G38620.1	15805477
AT5G65330.1	CDY49671	AT5G38620.1	15805477
AT5G65330.1	CDY50510	AT5G38620.1	15805477
AT5G65330.1	CDY67845	AT5G38620.1	15805477
AT5G65330.1	CDY30838	AT5G38740.1	15805477
AT5G65330.1	CDY36817	AT5G38740.1	15805477
AT5G65330.1	CDY36823	AT5G38740.1	15805477
AT5G65330.1	CDY44595	AT5G38740.1	15805477
AT5G65330.1	CDY44597	AT5G38740.1	15805477
AT5G65330.1	CDY44599	AT5G38740.1	15805477
AT5G65330.1	CDY65583	AT5G38740.1	15805477
AT5G65330.1	CDY68883	AT5G38740.1	15805477
AT5G65330.1	CDX77232	AT5G49420.1	15805477
AT5G65330.1	CDX85396	AT5G49420.1	15805477
AT5G65330.1	CDX85418	AT5G49420.1	15805477
AT5G65330.1	CDX86226	AT5G49420.1	15805477
AT5G65330.1	CDX86252	AT5G49420.1	15805477
AT5G65330.1	CDX93668	AT5G49420.1	15805477
AT5G65330.1	CDY01199	AT5G49420.1	15805477
AT5G65330.1	CDY12741	AT5G49420.1	15805477
AT5G65330.1	CDY12757	AT5G49420.1	15805477
AT5G65330.1	CDY16511	AT5G49420.1	15805477
AT5G65330.1	CDY16529	AT5G49420.1	15805477
AT5G65330.1	CDY28103	AT5G49420.1	15805477
AT5G65330.1	CDY32839	AT5G49420.1	15805477
AT5G65330.1	CDY46277	AT5G49420.1	15805477
AT5G65330.1	CDY49671	AT5G49420.1	15805477
AT5G65330.1	CDY50510	AT5G49420.1	15805477
AT5G65330.1	CDY67845	AT5G49420.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37821	Canola	nucleus	86.16	90.22
Bra031864.1-P	Field mustard	nucleus	87.89	76.74
AT4G02235.1	Thale cress	nucleus	30.8	45.41
AT5G65330.1	Thale cress	nucleus	46.37	39.3
AT4G11250.1	Thale cress	nucleus	37.72	33.13
CDY44595	Canola	nucleus	33.22	30.09
CDY68883	Canola	nucleus	30.1	29.29
CDY30838	Canola	nucleus	35.64	28.77
CDY63010	Canola	plastid	5.88	27.42
CDY44599	Canola	nucleus	31.83	27.38
CDY65583	Canola	plastid	26.3	26.48
CDY36823	Canola	nucleus	26.99	25.57
CDY36817	Canola	plastid	24.57	24.32
CDY44597	Canola	nucleus	16.95	20.68
CDY63012	Canola	cytosol	13.84	20.0
CDY18534	Canola	mitochondrion, nucleus, plastid	16.95	19.92
CDX95509	Canola	plastid	18.34	18.34
CDY18533	Canola	nucleus	4.5	17.81
CDX93682	Canola	nucleus	14.88	17.77
CDX99332	Canola	plastid	21.8	17.7
CDY56522	Canola	nucleus	14.19	17.6
CDX92256	Canola	plastid	22.15	17.3
CDX73406	Canola	plastid	15.57	15.96
CDX93744	Canola	nucleus	15.57	15.79
CDX73409	Canola	nucleus	12.46	15.65
CDY28851	Canola	nucleus	14.88	15.14
CDX93708	Canola	nucleus	14.19	14.86
CDX93743	Canola	nucleus	12.8	14.07
CDY67867	Canola	mitochondrion	20.42	13.98
CDY40199	Canola	nucleus	12.11	13.41
CDY27890	Canola	nucleus	14.53	13.17
CDY40595	Canola	cytosol, golgi, vacuole	14.88	12.65
CDX75976	Canola	mitochondrion, nucleus	8.3	11.82

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078H8Y6	UniProt:A0A078H8Y6	EnsemblPlants:CDY33964	ProteinID:CDY33964
ProteinID:CDY33964.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00055802001	InterPro:IPR002100	InterPro:IPR036879	PFAM:PF00319	PFscan:PS50066
PANTHER:PTHR11945	PANTHER:PTHR11945:SF350	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI0004EF08CF	SEG:seg	:	:	:	:

Description

BnaC02g43730DBnaC02g43730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8Y6]

Coordinates

chrLK032325:-:169896..170924

Molecular Weight (calculated)

32904.2 Da

IEP (calculated)

10.123

GRAVY (calculated)

-0.718

Length

289 amino acids

Sequence
(BLAST)

001: MRASSSSSSN SLAATSLSNR LKTIFKKASE LSILCQVAVS VIYYGPNGEL KTWPKEKEVV KDMALRYKAA TKRKKSSNLR TLSTMEERIR VLEAKKQKNT
101: NLVHQNLTQQ RHHQHQTVQP LNPSQYSLYL FNRDDATLSQ LPLSASHSKQ LISYQNQLRM QQQRLYDPCV SNTQGHPALL TVQESWLKNQ LMQQQEPYGS
201: HHNMRTMNNT TNSKVLGHPC PLNTIPKEFS FDLQKNPNDD MVGRPKFSQD FPNLCLAYAD SPQLQTSSLP SIHQTIPNIN LIPDNSRCL

Best Arabidopsis Sequence Match ( AT5G65330.1 )
(BLAST)

001: MKQASSSSSS RNSTSLTNRL KTIFKKAEEL SILCAIEVCV IYYGPDGELR TWPKERETVK DMALRYKEAR KRKKSRNLHE FLEKEKDKDK GKTNLKKNWY
101: PNFDHYSPQQ LSQLIQSLER TLSTLQERLR IVEAQKLQNT NLVHQSLTPS YLNQTQHLNP SKFSLFMYNH GDATLSQLPL SAPHSNQLIN YQNHLMQHGF
201: GQNMCSDNIT NNNFEHPGVS NTQDYSPLLS VQASAVNNYG LNNHLMQQQD QLHGFDQNMC MVSEIINNNN GLQHPNLSNT VPHEFSSDFN QNPYGNAVGN
301: ISFSQDMFSS YDASSLLQTS SLPPLHNIPS SYCFPGNSRL L

Arabidopsis Description

AGL78AGAMOUS-like 78 [Source:UniProtKB/TrEMBL;Acc:Q9FKQ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.